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Cluster: HRGMv2_4820_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4820_71 HRGMv2_4820_71_1 1 426 + 3.A.1.4.7
TC HRGMv2_4820_71 HRGMv2_4820_71_2 423 1127 + 3.A.1.4.10
TC HRGMv2_4820_71 HRGMv2_4820_71_3 1129 2016 + 3.A.1.4.7
TC HRGMv2_4820_71 HRGMv2_4820_71_4 2018 3016 + 3.A.1.4.7
CAZyme HRGMv2_4820_71 HRGMv2_4820_71_5 3047 4642 + AA3_2
TC HRGMv2_4820_71 HRGMv2_4820_71_6 4715 5626 + 3.A.1.12.15
TC HRGMv2_4820_71 HRGMv2_4820_71_7 5629 6771 + 3.A.1.12.15
TC HRGMv2_4820_71 HRGMv2_4820_71_8 6768 7694 + 3.A.1.12.15
TC HRGMv2_4820_71 HRGMv2_4820_71_9 7691 8428 + 3.A.1.12.15
TF HRGMv2_4820_71 HRGMv2_4820_71_10 8433 9191 - Crp
TC HRGMv2_4820_71 HRGMv2_4820_71_11 9443 12175 + 2.A.1.8.11
TC HRGMv2_4820_71 HRGMv2_4820_71_12 12172 15504 + 5.A.3.1.1
Gene ID: HRGMv2_4820_71_1
Type: TC
Location: 1 - 426 (+)
Gene ID: HRGMv2_4820_71_2
Type: TC
Location: 423 - 1127 (+)
Gene ID: HRGMv2_4820_71_3
Type: TC
Location: 1129 - 2016 (+)
Gene ID: HRGMv2_4820_71_4
Type: TC
Location: 2018 - 3016 (+)
Gene ID: HRGMv2_4820_71_5
Type: CAZyme
Location: 3047 - 4642 (+)
Gene ID: HRGMv2_4820_71_6
Type: TC
Location: 4715 - 5626 (+)
Gene ID: HRGMv2_4820_71_7
Type: TC
Location: 5629 - 6771 (+)
Gene ID: HRGMv2_4820_71_8
Type: TC
Location: 6768 - 7694 (+)
Gene ID: HRGMv2_4820_71_9
Type: TC
Location: 7691 - 8428 (+)
Gene ID: HRGMv2_4820_71_10
Type: TF
Location: 8433 - 9191 (-)
Gene ID: HRGMv2_4820_71_11
Type: TC
Location: 9443 - 12175 (+)
Gene ID: HRGMv2_4820_71_12
Type: TC
Location: 12172 - 15504 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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