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Cluster: HRGMv2_4820_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4820_36 HRGMv2_4820_36_14 11935 12690 + GT51
pfam HRGMv2_4820_36 HRGMv2_4820_36_15 12778 13467 + GST_N | GST_N_2 | GST_N_3 | GST_C_3
pfam HRGMv2_4820_36 HRGMv2_4820_36_16 13448 14503 + QueG_DUF1730 | Fer4_16
TC HRGMv2_4820_36 HRGMv2_4820_36_17 14479 15441 + 2.A.7.28.1
NULL(UNKNOWN) HRGMv2_4820_36 HRGMv2_4820_36_18 15438 16832 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4820_36 HRGMv2_4820_36_19 16867 18537 - GT14
CAZyme HRGMv2_4820_36 HRGMv2_4820_36_20 18534 19559 - GT2
CAZyme HRGMv2_4820_36 HRGMv2_4820_36_21 19569 20834 - GT4
pfam HRGMv2_4820_36 HRGMv2_4820_36_22 20824 21822 - 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | GDP_Man_Dehyd
pfam HRGMv2_4820_36 HRGMv2_4820_36_23 21825 22715 - NTP_transferase
CAZyme HRGMv2_4820_36 HRGMv2_4820_36_24 22865 24070 - GT2
Gene ID: HRGMv2_4820_36_14
Type: CAZyme
Location: 11935 - 12690 (+)
Gene ID: HRGMv2_4820_36_15
Type: pfam
Location: 12778 - 13467 (+)
Gene ID: HRGMv2_4820_36_16
Type: pfam
Location: 13448 - 14503 (+)
Gene ID: HRGMv2_4820_36_17
Type: TC
Location: 14479 - 15441 (+)
Gene ID: HRGMv2_4820_36_18
Type:
Location: 15438 - 16832 (-)
Gene ID: HRGMv2_4820_36_19
Type: CAZyme
Location: 16867 - 18537 (-)
Gene ID: HRGMv2_4820_36_20
Type: CAZyme
Location: 18534 - 19559 (-)
Gene ID: HRGMv2_4820_36_21
Type: CAZyme
Location: 19569 - 20834 (-)
Gene ID: HRGMv2_4820_36_22
Type: pfam
Location: 20824 - 21822 (-)
Gene ID: HRGMv2_4820_36_23
Type: pfam
Location: 21825 - 22715 (-)
Gene ID: HRGMv2_4820_36_24
Type: CAZyme
Location: 22865 - 24070 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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