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Cluster: HRGMv2_4820_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4820_35 HRGMv2_4820_35_13 13161 14948 + GH15
CAZyme HRGMv2_4820_35 HRGMv2_4820_35_14 14945 16297 + GT20
pfam HRGMv2_4820_35 HRGMv2_4820_35_15 16294 16977 - SURF1
TC HRGMv2_4820_35 HRGMv2_4820_35_16 17019 17393 - 3.D.4.5.1
TC HRGMv2_4820_35 HRGMv2_4820_35_17 17393 18013 - 3.D.4.5.1
TC HRGMv2_4820_35 HRGMv2_4820_35_18 18017 20026 - 3.D.4.5.1
TC HRGMv2_4820_35 HRGMv2_4820_35_19 20040 21245 - 3.D.4.5.1
TC HRGMv2_4820_35 HRGMv2_4820_35_20 21451 22761 + 2.A.1.6.10
pfam HRGMv2_4820_35 HRGMv2_4820_35_21 22875 23138 + PhdYeFM_antitox
pfam HRGMv2_4820_35 HRGMv2_4820_35_22 23139 23543 + PIN
TC HRGMv2_4820_35 HRGMv2_4820_35_23 23713 25101 + 2.A.23.1.8
pfam HRGMv2_4820_35 HRGMv2_4820_35_24 25221 25604 + 4HBT | 4HBT_3
CAZyme HRGMv2_4820_35 HRGMv2_4820_35_25 25720 27006 - GH103
Gene ID: HRGMv2_4820_35_13
Type: CAZyme
Location: 13161 - 14948 (+)
Gene ID: HRGMv2_4820_35_14
Type: CAZyme
Location: 14945 - 16297 (+)
Gene ID: HRGMv2_4820_35_15
Type: pfam
Location: 16294 - 16977 (-)
Gene ID: HRGMv2_4820_35_16
Type: TC
Location: 17019 - 17393 (-)
Gene ID: HRGMv2_4820_35_17
Type: TC
Location: 17393 - 18013 (-)
Gene ID: HRGMv2_4820_35_18
Type: TC
Location: 18017 - 20026 (-)
Gene ID: HRGMv2_4820_35_19
Type: TC
Location: 20040 - 21245 (-)
Gene ID: HRGMv2_4820_35_20
Type: TC
Location: 21451 - 22761 (+)
Gene ID: HRGMv2_4820_35_21
Type: pfam
Location: 22875 - 23138 (+)
Gene ID: HRGMv2_4820_35_22
Type: pfam
Location: 23139 - 23543 (+)
Gene ID: HRGMv2_4820_35_23
Type: TC
Location: 23713 - 25101 (+)
Gene ID: HRGMv2_4820_35_24
Type: pfam
Location: 25221 - 25604 (+)
Gene ID: HRGMv2_4820_35_25
Type: CAZyme
Location: 25720 - 27006 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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