Cluster: HRGMv2_4820_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4820
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4820_25 | HRGMv2_4820_25_31 | 27880 | 28839 | + | 1.A.35.1.1 |
| pfam | HRGMv2_4820_25 | HRGMv2_4820_25_32 | 28844 | 29524 | - | DUF1045 |
| TC | HRGMv2_4820_25 | HRGMv2_4820_25_33 | 29650 | 30714 | + | 2.A.109.3.1 |
| peptidase | HRGMv2_4820_25 | HRGMv2_4820_25_34 | 30809 | 32626 | - | M24.UPB |
| CAZyme | HRGMv2_4820_25 | HRGMv2_4820_25_35 | 32653 | 33654 | - | GT4 |
Gene ID: HRGMv2_4820_25_31
Type: TC
Location: 27880 - 28839 (+)
Type: TC
Location: 27880 - 28839 (+)
Gene ID: HRGMv2_4820_25_32
Type: pfam
Location: 28844 - 29524 (-)
Type: pfam
Location: 28844 - 29524 (-)
Gene ID: HRGMv2_4820_25_33
Type: TC
Location: 29650 - 30714 (+)
Type: TC
Location: 29650 - 30714 (+)
Gene ID: HRGMv2_4820_25_34
Type: peptidase
Location: 30809 - 32626 (-)
Type: peptidase
Location: 30809 - 32626 (-)
Gene ID: HRGMv2_4820_25_35
Type: CAZyme
Location: 32653 - 33654 (-)
Type: CAZyme
Location: 32653 - 33654 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Rhodobacteraceae
Genus
Paracoccus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.