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Cluster: HRGMv2_4820_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4820_21 HRGMv2_4820_21_19 17630 18451 + 3.A.1.105.17
pfam HRGMv2_4820_21 HRGMv2_4820_21_20 18618 19787 + Aminotran_3
pfam HRGMv2_4820_21 HRGMv2_4820_21_21 20036 20962 + OTCace | OTCace_N
TC HRGMv2_4820_21 HRGMv2_4820_21_22 21047 22447 - 3.A.1.110.3
TC HRGMv2_4820_21 HRGMv2_4820_21_23 22444 24186 - 3.A.1.110.3
TC HRGMv2_4820_21 HRGMv2_4820_21_24 24430 25059 + 3.A.1.27.3
pfam HRGMv2_4820_21 HRGMv2_4820_21_25 25049 25645 + MlaC
CAZyme HRGMv2_4820_21 HRGMv2_4820_21_26 25697 28054 - GT51
TC HRGMv2_4820_21 HRGMv2_4820_21_27 28311 29750 + 1.A.11.1.4
Gene ID: HRGMv2_4820_21_19
Type: TC
Location: 17630 - 18451 (+)
Gene ID: HRGMv2_4820_21_20
Type: pfam
Location: 18618 - 19787 (+)
Gene ID: HRGMv2_4820_21_21
Type: pfam
Location: 20036 - 20962 (+)
Gene ID: HRGMv2_4820_21_22
Type: TC
Location: 21047 - 22447 (-)
Gene ID: HRGMv2_4820_21_23
Type: TC
Location: 22444 - 24186 (-)
Gene ID: HRGMv2_4820_21_24
Type: TC
Location: 24430 - 25059 (+)
Gene ID: HRGMv2_4820_21_25
Type: pfam
Location: 25049 - 25645 (+)
Gene ID: HRGMv2_4820_21_26
Type: CAZyme
Location: 25697 - 28054 (-)
Gene ID: HRGMv2_4820_21_27
Type: TC
Location: 28311 - 29750 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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