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Cluster: HRGMv2_4820_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4820_19 HRGMv2_4820_19_10 7086 8984 + 3.A.1.5.21
TC HRGMv2_4820_19 HRGMv2_4820_19_11 9031 10170 + 3.A.1.5.24
TC HRGMv2_4820_19 HRGMv2_4820_19_12 10170 11276 + 3.A.1.5.21
TC HRGMv2_4820_19 HRGMv2_4820_19_13 11273 12868 + 3.A.1.5.21
CAZyme HRGMv2_4820_19 HRGMv2_4820_19_14 12865 14079 + GT4
NULL(UNKNOWN) HRGMv2_4820_19 HRGMv2_4820_19_15 14076 14564 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4820_19 HRGMv2_4820_19_16 14639 15364 - TerB
TC HRGMv2_4820_19 HRGMv2_4820_19_17 15427 16251 - 3.A.1.6.1
TC HRGMv2_4820_19 HRGMv2_4820_19_18 16248 17090 - 3.A.1.6.1
TC HRGMv2_4820_19 HRGMv2_4820_19_19 17087 18085 - 3.A.1.6.1
TC HRGMv2_4820_19 HRGMv2_4820_19_20 18082 19182 - 3.A.1.6.1
Gene ID: HRGMv2_4820_19_10
Type: TC
Location: 7086 - 8984 (+)
Gene ID: HRGMv2_4820_19_11
Type: TC
Location: 9031 - 10170 (+)
Gene ID: HRGMv2_4820_19_12
Type: TC
Location: 10170 - 11276 (+)
Gene ID: HRGMv2_4820_19_13
Type: TC
Location: 11273 - 12868 (+)
Gene ID: HRGMv2_4820_19_14
Type: CAZyme
Location: 12865 - 14079 (+)
Gene ID: HRGMv2_4820_19_15
Type:
Location: 14076 - 14564 (-)
Gene ID: HRGMv2_4820_19_16
Type: pfam
Location: 14639 - 15364 (-)
Gene ID: HRGMv2_4820_19_17
Type: TC
Location: 15427 - 16251 (-)
Gene ID: HRGMv2_4820_19_18
Type: TC
Location: 16248 - 17090 (-)
Gene ID: HRGMv2_4820_19_19
Type: TC
Location: 17087 - 18085 (-)
Gene ID: HRGMv2_4820_19_20
Type: TC
Location: 18082 - 19182 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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