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Cluster: HRGMv2_4815_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4815_24 HRGMv2_4815_24_2 763 1419 - 4.B.1.1.4
pfam HRGMv2_4815_24 HRGMv2_4815_24_3 1447 2505 - 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | KR | GDP_Man_Dehyd
TC HRGMv2_4815_24 HRGMv2_4815_24_4 2612 3805 - 2.A.20.1.4
pfam HRGMv2_4815_24 HRGMv2_4815_24_5 3849 4496 - PhoU_div
pfam HRGMv2_4815_24 HRGMv2_4815_24_6 4730 5374 + PAP2 | PAP2_3
CAZyme HRGMv2_4815_24 HRGMv2_4815_24_7 5395 6411 - GH18
TC HRGMv2_4815_24 HRGMv2_4815_24_8 6510 8771 - 2.A.37.1.5
TF HRGMv2_4815_24 HRGMv2_4815_24_9 8969 9517 + GerE
STP HRGMv2_4815_24 HRGMv2_4815_24_10 9594 10637 + FecR
TC HRGMv2_4815_24 HRGMv2_4815_24_11 10678 13911 + 1.B.14.6.1
TC HRGMv2_4815_24 HRGMv2_4815_24_12 13933 15414 + 8.A.46.1.3
Gene ID: HRGMv2_4815_24_2
Type: TC
Location: 763 - 1419 (-)
Gene ID: HRGMv2_4815_24_3
Type: pfam
Location: 1447 - 2505 (-)
Gene ID: HRGMv2_4815_24_4
Type: TC
Location: 2612 - 3805 (-)
Gene ID: HRGMv2_4815_24_5
Type: pfam
Location: 3849 - 4496 (-)
Gene ID: HRGMv2_4815_24_6
Type: pfam
Location: 4730 - 5374 (+)
Gene ID: HRGMv2_4815_24_7
Type: CAZyme
Location: 5395 - 6411 (-)
Gene ID: HRGMv2_4815_24_8
Type: TC
Location: 6510 - 8771 (-)
Gene ID: HRGMv2_4815_24_9
Type: TF
Location: 8969 - 9517 (+)
Gene ID: HRGMv2_4815_24_10
Type: STP
Location: 9594 - 10637 (+)
Gene ID: HRGMv2_4815_24_11
Type: TC
Location: 10678 - 13911 (+)
Gene ID: HRGMv2_4815_24_12
Type: TC
Location: 13933 - 15414 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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