Cluster: HRGMv2_4807_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4807
- CGC Family ID: CGCFAM_01441
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4807_10 | HRGMv2_4807_10_23 | 21946 | 24510 | - | 3.A.7.7.1 |
| TC | HRGMv2_4807_10 | HRGMv2_4807_10_24 | 24652 | 25593 | - | 1.E.43.3.1 |
| pfam | HRGMv2_4807_10 | HRGMv2_4807_10_25 | 25630 | 26202 | - | DUF494 |
| pfam | HRGMv2_4807_10 | HRGMv2_4807_10_26 | 26318 | 27436 | - | DNA_processg_A | DprA_WH |
| CAZyme | HRGMv2_4807_10 | HRGMv2_4807_10_27 | 27510 | 28682 | - | CBM50 |
Gene ID: HRGMv2_4807_10_23
Type: TC
Location: 21946 - 24510 (-)
Type: TC
Location: 21946 - 24510 (-)
Gene ID: HRGMv2_4807_10_24
Type: TC
Location: 24652 - 25593 (-)
Type: TC
Location: 24652 - 25593 (-)
Gene ID: HRGMv2_4807_10_25
Type: pfam
Location: 25630 - 26202 (-)
Type: pfam
Location: 25630 - 26202 (-)
Gene ID: HRGMv2_4807_10_26
Type: pfam
Location: 26318 - 27436 (-)
Type: pfam
Location: 26318 - 27436 (-)
Gene ID: HRGMv2_4807_10_27
Type: CAZyme
Location: 27510 - 28682 (-)
Type: CAZyme
Location: 27510 - 28682 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Lysobacter_G
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.