Cluster: HRGMv2_4807_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4807
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4807_62 | HRGMv2_4807_62_2 | 1008 | 2126 | - | GH103 |
| TC | HRGMv2_4807_62 | HRGMv2_4807_62_3 | 2175 | 3284 | - | 2.A.103.1.2 |
| peptidase | HRGMv2_4807_62 | HRGMv2_4807_62_4 | 3281 | 5227 | - | X52.001 |
| pfam | HRGMv2_4807_62 | HRGMv2_4807_62_5 | 5240 | 5716 | - | MreD |
| TC | HRGMv2_4807_62 | HRGMv2_4807_62_6 | 5713 | 6648 | - | 9.B.157.1.3 |
| TC | HRGMv2_4807_62 | HRGMv2_4807_62_7 | 6754 | 7800 | - | 9.B.157.1.3 |
Gene ID: HRGMv2_4807_62_2
Type: CAZyme
Location: 1008 - 2126 (-)
Type: CAZyme
Location: 1008 - 2126 (-)
Gene ID: HRGMv2_4807_62_3
Type: TC
Location: 2175 - 3284 (-)
Type: TC
Location: 2175 - 3284 (-)
Gene ID: HRGMv2_4807_62_4
Type: peptidase
Location: 3281 - 5227 (-)
Type: peptidase
Location: 3281 - 5227 (-)
Gene ID: HRGMv2_4807_62_5
Type: pfam
Location: 5240 - 5716 (-)
Type: pfam
Location: 5240 - 5716 (-)
Gene ID: HRGMv2_4807_62_6
Type: TC
Location: 5713 - 6648 (-)
Type: TC
Location: 5713 - 6648 (-)
Gene ID: HRGMv2_4807_62_7
Type: TC
Location: 6754 - 7800 (-)
Type: TC
Location: 6754 - 7800 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Lysobacter_G
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.