Cluster: HRGMv2_4807_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4807
- CGC Family ID: CGCFAM_03206
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4807_55 | HRGMv2_4807_55_15 | 9746 | 11410 | + | 3.A.1.120.6 |
| pfam | HRGMv2_4807_55 | HRGMv2_4807_55_16 | 11517 | 12332 | + | OMPdecase |
| CAZyme | HRGMv2_4807_55 | HRGMv2_4807_55_17 | 12548 | 13381 | - | GT2 |
| CAZyme | HRGMv2_4807_55 | HRGMv2_4807_55_18 | 13386 | 14273 | - | GT2 |
| TC | HRGMv2_4807_55 | HRGMv2_4807_55_19 | 14278 | 16386 | - | 3.A.15.3.1 |
Gene ID: HRGMv2_4807_55_15
Type: TC
Location: 9746 - 11410 (+)
Type: TC
Location: 9746 - 11410 (+)
Gene ID: HRGMv2_4807_55_16
Type: pfam
Location: 11517 - 12332 (+)
Type: pfam
Location: 11517 - 12332 (+)
Gene ID: HRGMv2_4807_55_17
Type: CAZyme
Location: 12548 - 13381 (-)
Type: CAZyme
Location: 12548 - 13381 (-)
Gene ID: HRGMv2_4807_55_18
Type: CAZyme
Location: 13386 - 14273 (-)
Type: CAZyme
Location: 13386 - 14273 (-)
Gene ID: HRGMv2_4807_55_19
Type: TC
Location: 14278 - 16386 (-)
Type: TC
Location: 14278 - 16386 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Lysobacter_G
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.