Cluster: HRGMv2_4807_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4807
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4807_53 | HRGMv2_4807_53_10 | 11553 | 13403 | + | AA1 |
| TC | HRGMv2_4807_53 | HRGMv2_4807_53_11 | 13400 | 14536 | + | 1.B.76.1.1 |
| pfam | HRGMv2_4807_53 | HRGMv2_4807_53_12 | 14552 | 15661 | + | Cytochrome_CBB3 | DUF4440 |
| TF | HRGMv2_4807_53 | HRGMv2_4807_53_13 | 15749 | 16147 | + | MerR |
| TC | HRGMv2_4807_53 | HRGMv2_4807_53_14 | 16144 | 17550 | + | 3.A.3.5.4 |
Gene ID: HRGMv2_4807_53_10
Type: CAZyme
Location: 11553 - 13403 (+)
Type: CAZyme
Location: 11553 - 13403 (+)
Gene ID: HRGMv2_4807_53_11
Type: TC
Location: 13400 - 14536 (+)
Type: TC
Location: 13400 - 14536 (+)
Gene ID: HRGMv2_4807_53_12
Type: pfam
Location: 14552 - 15661 (+)
Type: pfam
Location: 14552 - 15661 (+)
Gene ID: HRGMv2_4807_53_13
Type: TF
Location: 15749 - 16147 (+)
Type: TF
Location: 15749 - 16147 (+)
Gene ID: HRGMv2_4807_53_14
Type: TC
Location: 16144 - 17550 (+)
Type: TC
Location: 16144 - 17550 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Lysobacter_G
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.