Cluster: HRGMv2_4799_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4799
- CGC Family ID: CGCFAM_04765
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4799_2 | HRGMv2_4799_2_210 | 259040 | 260704 | - | 3.D.10.1.4 |
| CAZyme | HRGMv2_4799_2 | HRGMv2_4799_2_211 | 260757 | 262970 | - | GH89 |
| pfam | HRGMv2_4799_2 | HRGMv2_4799_2_212 | 262979 | 263602 | - | N_methyl |
| TC | HRGMv2_4799_2 | HRGMv2_4799_2_213 | 263608 | 264906 | - | 3.A.11.1.3 |
| TC | HRGMv2_4799_2 | HRGMv2_4799_2_214 | 264973 | 266640 | - | 3.A.11.1.3 |
| TC | HRGMv2_4799_2 | HRGMv2_4799_2_215 | 266665 | 268344 | - | 3.A.15.4.1 |
Gene ID: HRGMv2_4799_2_210
Type: TC
Location: 259040 - 260704 (-)
Type: TC
Location: 259040 - 260704 (-)
Gene ID: HRGMv2_4799_2_211
Type: CAZyme
Location: 260757 - 262970 (-)
Type: CAZyme
Location: 260757 - 262970 (-)
Gene ID: HRGMv2_4799_2_212
Type: pfam
Location: 262979 - 263602 (-)
Type: pfam
Location: 262979 - 263602 (-)
Gene ID: HRGMv2_4799_2_213
Type: TC
Location: 263608 - 264906 (-)
Type: TC
Location: 263608 - 264906 (-)
Gene ID: HRGMv2_4799_2_214
Type: TC
Location: 264973 - 266640 (-)
Type: TC
Location: 264973 - 266640 (-)
Gene ID: HRGMv2_4799_2_215
Type: TC
Location: 266665 - 268344 (-)
Type: TC
Location: 266665 - 268344 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.