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Cluster: HRGMv2_4799_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4799_24 HRGMv2_4799_24_8 6603 8654 + GH36
CAZyme HRGMv2_4799_24 HRGMv2_4799_24_9 8675 10606 + GH36
pfam HRGMv2_4799_24 HRGMv2_4799_24_10 10930 12480 - GIY-YIG | UVR | UvrC_RNaseH_dom
TC HRGMv2_4799_24 HRGMv2_4799_24_11 12572 13279 + 1.A.14.2.2
pfam HRGMv2_4799_24 HRGMv2_4799_24_12 13310 13768 + R3H
NULL(UNKNOWN) HRGMv2_4799_24 HRGMv2_4799_24_13 13768 14499 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4799_24 HRGMv2_4799_24_14 14515 16614 + GH36
pfam HRGMv2_4799_24 HRGMv2_4799_24_15 16733 18019 + Arginosuc_synth | Arginosuc_syn_C
CAZyme HRGMv2_4799_24 HRGMv2_4799_24_16 18026 19066 + GT2
CAZyme HRGMv2_4799_24 HRGMv2_4799_24_17 19246 20394 + GT4
CAZyme HRGMv2_4799_24 HRGMv2_4799_24_18 20420 21430 + GT2
Gene ID: HRGMv2_4799_24_8
Type: CAZyme
Location: 6603 - 8654 (+)
Gene ID: HRGMv2_4799_24_9
Type: CAZyme
Location: 8675 - 10606 (+)
Gene ID: HRGMv2_4799_24_10
Type: pfam
Location: 10930 - 12480 (-)
Gene ID: HRGMv2_4799_24_11
Type: TC
Location: 12572 - 13279 (+)
Gene ID: HRGMv2_4799_24_12
Type: pfam
Location: 13310 - 13768 (+)
Gene ID: HRGMv2_4799_24_13
Type:
Location: 13768 - 14499 (+)
Gene ID: HRGMv2_4799_24_14
Type: CAZyme
Location: 14515 - 16614 (+)
Gene ID: HRGMv2_4799_24_15
Type: pfam
Location: 16733 - 18019 (+)
Gene ID: HRGMv2_4799_24_16
Type: CAZyme
Location: 18026 - 19066 (+)
Gene ID: HRGMv2_4799_24_17
Type: CAZyme
Location: 19246 - 20394 (+)
Gene ID: HRGMv2_4799_24_18
Type: CAZyme
Location: 20420 - 21430 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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