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Cluster: HRGMv2_4799_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4799_1 HRGMv2_4799_1_34 38862 39827 - 2.A.28.2.4
pfam HRGMv2_4799_1 HRGMv2_4799_1_35 40111 41535 - AAA_14 | DUF4143
peptidase HRGMv2_4799_1 HRGMv2_4799_1_36 41866 42339 - C82.UPA
CAZyme HRGMv2_4799_1 HRGMv2_4799_1_37 42347 43417 - GT28
TC HRGMv2_4799_1 HRGMv2_4799_1_38 43442 44581 - 2.A.103.1.3
pfam HRGMv2_4799_1 HRGMv2_4799_1_39 44594 45466 - LysM | LysM
pfam HRGMv2_4799_1 HRGMv2_4799_1_40 45489 46799 - Mur_ligase_C | Mur_ligase_M
TC HRGMv2_4799_1 HRGMv2_4799_1_41 46817 47917 - 9.B.146.1.6
Gene ID: HRGMv2_4799_1_34
Type: TC
Location: 38862 - 39827 (-)
Gene ID: HRGMv2_4799_1_35
Type: pfam
Location: 40111 - 41535 (-)
Gene ID: HRGMv2_4799_1_36
Type: peptidase
Location: 41866 - 42339 (-)
Gene ID: HRGMv2_4799_1_37
Type: CAZyme
Location: 42347 - 43417 (-)
Gene ID: HRGMv2_4799_1_38
Type: TC
Location: 43442 - 44581 (-)
Gene ID: HRGMv2_4799_1_39
Type: pfam
Location: 44594 - 45466 (-)
Gene ID: HRGMv2_4799_1_40
Type: pfam
Location: 45489 - 46799 (-)
Gene ID: HRGMv2_4799_1_41
Type: TC
Location: 46817 - 47917 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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