Cluster: HRGMv2_4799_CGC15
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_4799
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4799_8 | HRGMv2_4799_8_4 | 1347 | 2135 | + | 9.B.10.1.1 |
| pfam | HRGMv2_4799_8 | HRGMv2_4799_8_5 | 2215 | 3099 | + | AP_endonuc_2 |
| CAZyme | HRGMv2_4799_8 | HRGMv2_4799_8_6 | 3103 | 4251 | - | GT2 |
| CAZyme | HRGMv2_4799_8 | HRGMv2_4799_8_7 | 4271 | 5428 | - | GT2 |
| CAZyme | HRGMv2_4799_8 | HRGMv2_4799_8_8 | 5425 | 6459 | - | GT2 |
| TC | HRGMv2_4799_8 | HRGMv2_4799_8_9 | 6534 | 8435 | + | 3.A.1.135.5 |
| TC | HRGMv2_4799_8 | HRGMv2_4799_8_10 | 8429 | 10216 | + | 3.A.1.106.1 |
| NULL(UNKNOWN) | HRGMv2_4799_8 | HRGMv2_4799_8_11 | 10462 | 10854 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4799_8 | HRGMv2_4799_8_12 | 10987 | 11331 | + | HIT | DcpS_C |
| CAZyme | HRGMv2_4799_8 | HRGMv2_4799_8_13 | 11374 | 13740 | + | GH31_1 |
| STP | HRGMv2_4799_8 | HRGMv2_4799_8_14 | 13747 | 14889 | + | HATPase_c | HisKA |
| STP | HRGMv2_4799_8 | HRGMv2_4799_8_15 | 15089 | 16141 | + | HTH_IclR |
| TC | HRGMv2_4799_8 | HRGMv2_4799_8_16 | 16239 | 17984 | + | 2.A.22.4.2 |
Gene ID: HRGMv2_4799_8_4
Type: TC
Location: 1347 - 2135 (+)
Type: TC
Location: 1347 - 2135 (+)
Gene ID: HRGMv2_4799_8_5
Type: pfam
Location: 2215 - 3099 (+)
Type: pfam
Location: 2215 - 3099 (+)
Gene ID: HRGMv2_4799_8_6
Type: CAZyme
Location: 3103 - 4251 (-)
Type: CAZyme
Location: 3103 - 4251 (-)
Gene ID: HRGMv2_4799_8_7
Type: CAZyme
Location: 4271 - 5428 (-)
Type: CAZyme
Location: 4271 - 5428 (-)
Gene ID: HRGMv2_4799_8_8
Type: CAZyme
Location: 5425 - 6459 (-)
Type: CAZyme
Location: 5425 - 6459 (-)
Gene ID: HRGMv2_4799_8_9
Type: TC
Location: 6534 - 8435 (+)
Type: TC
Location: 6534 - 8435 (+)
Gene ID: HRGMv2_4799_8_10
Type: TC
Location: 8429 - 10216 (+)
Type: TC
Location: 8429 - 10216 (+)
Gene ID: HRGMv2_4799_8_11
Type:
Location: 10462 - 10854 (+)
Type:
Location: 10462 - 10854 (+)
Gene ID: HRGMv2_4799_8_12
Type: pfam
Location: 10987 - 11331 (+)
Type: pfam
Location: 10987 - 11331 (+)
Gene ID: HRGMv2_4799_8_13
Type: CAZyme
Location: 11374 - 13740 (+)
Type: CAZyme
Location: 11374 - 13740 (+)
Gene ID: HRGMv2_4799_8_14
Type: STP
Location: 13747 - 14889 (+)
Type: STP
Location: 13747 - 14889 (+)
Gene ID: HRGMv2_4799_8_15
Type: STP
Location: 15089 - 16141 (+)
Type: STP
Location: 15089 - 16141 (+)
Gene ID: HRGMv2_4799_8_16
Type: TC
Location: 16239 - 17984 (+)
Type: TC
Location: 16239 - 17984 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.