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Cluster: HRGMv2_4787_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4787_1 HRGMv2_4787_1_16 31792 32568 + 3.A.1.23.8
pfam HRGMv2_4787_1 HRGMv2_4787_1_17 32568 32879 + CbiN
pfam HRGMv2_4787_1 HRGMv2_4787_1_18 32950 33753 + CbiQ
TC HRGMv2_4787_1 HRGMv2_4787_1_19 33780 34607 + 3.A.1.23.8
pfam HRGMv2_4787_1 HRGMv2_4787_1_20 34790 35623 - LGT
CAZyme HRGMv2_4787_1 HRGMv2_4787_1_21 35879 37768 + GH18
pfam HRGMv2_4787_1 HRGMv2_4787_1_22 37982 40456 + tRNA-synt_1 | tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1g | tRNA-synt_1_2
TF HRGMv2_4787_1 HRGMv2_4787_1_23 40512 41027 + HTH_11
TC HRGMv2_4787_1 HRGMv2_4787_1_24 41267 42586 + 2.A.1.82.4
pfam HRGMv2_4787_1 HRGMv2_4787_1_25 43139 43618 + dCMP_cyt_deam_1 | MafB19-deam
peptidase HRGMv2_4787_1 HRGMv2_4787_1_26 43923 45152 - M29.UPW
TC HRGMv2_4787_1 HRGMv2_4787_1_27 45233 45808 + 3.A.11.1.1
Gene ID: HRGMv2_4787_1_16
Type: TC
Location: 31792 - 32568 (+)
Gene ID: HRGMv2_4787_1_17
Type: pfam
Location: 32568 - 32879 (+)
Gene ID: HRGMv2_4787_1_18
Type: pfam
Location: 32950 - 33753 (+)
Gene ID: HRGMv2_4787_1_19
Type: TC
Location: 33780 - 34607 (+)
Gene ID: HRGMv2_4787_1_20
Type: pfam
Location: 34790 - 35623 (-)
Gene ID: HRGMv2_4787_1_21
Type: CAZyme
Location: 35879 - 37768 (+)
Gene ID: HRGMv2_4787_1_22
Type: pfam
Location: 37982 - 40456 (+)
Gene ID: HRGMv2_4787_1_23
Type: TF
Location: 40512 - 41027 (+)
Gene ID: HRGMv2_4787_1_24
Type: TC
Location: 41267 - 42586 (+)
Gene ID: HRGMv2_4787_1_25
Type: pfam
Location: 43139 - 43618 (+)
Gene ID: HRGMv2_4787_1_26
Type: peptidase
Location: 43923 - 45152 (-)
Gene ID: HRGMv2_4787_1_27
Type: TC
Location: 45233 - 45808 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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