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Cluster: HRGMv2_4786_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4786_4 HRGMv2_4786_4_21 24015 25034 + 3.A.1.20.2
TC HRGMv2_4786_4 HRGMv2_4786_4_22 25044 26708 + 3.A.1.20.4
TC HRGMv2_4786_4 HRGMv2_4786_4_23 26711 27727 + 3.A.1.20.1
pfam HRGMv2_4786_4 HRGMv2_4786_4_24 27837 29195 - DUF711
STP HRGMv2_4786_4 HRGMv2_4786_4_25 29204 29476 - ACT
TC HRGMv2_4786_4 HRGMv2_4786_4_26 29599 31140 + 2.A.49.5.5
pfam HRGMv2_4786_4 HRGMv2_4786_4_27 31196 31960 + Exo_endo_phos
CAZyme HRGMv2_4786_4 HRGMv2_4786_4_28 31969 33570 + GT83
Gene ID: HRGMv2_4786_4_21
Type: TC
Location: 24015 - 25034 (+)
Gene ID: HRGMv2_4786_4_22
Type: TC
Location: 25044 - 26708 (+)
Gene ID: HRGMv2_4786_4_23
Type: TC
Location: 26711 - 27727 (+)
Gene ID: HRGMv2_4786_4_24
Type: pfam
Location: 27837 - 29195 (-)
Gene ID: HRGMv2_4786_4_25
Type: STP
Location: 29204 - 29476 (-)
Gene ID: HRGMv2_4786_4_26
Type: TC
Location: 29599 - 31140 (+)
Gene ID: HRGMv2_4786_4_27
Type: pfam
Location: 31196 - 31960 (+)
Gene ID: HRGMv2_4786_4_28
Type: CAZyme
Location: 31969 - 33570 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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