Cluster: HRGMv2_4780_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4780
- CGC Family ID: CGCFAM_03470
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4780_2 | HRGMv2_4780_2_3 | 1717 | 3105 | + | 3.A.1.1.41 |
| TC | HRGMv2_4780_2 | HRGMv2_4780_2_4 | 3136 | 4059 | + | 3.A.1.1.20 |
| TC | HRGMv2_4780_2 | HRGMv2_4780_2_5 | 4076 | 4963 | + | 3.A.1.1.36 |
| CAZyme | HRGMv2_4780_2 | HRGMv2_4780_2_6 | 4981 | 8337 | + | CBM9 | GH39 |
| NULL(UNKNOWN) | HRGMv2_4780_2 | HRGMv2_4780_2_7 | 8359 | 10353 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4780_2 | HRGMv2_4780_2_8 | 10366 | 12714 | + | Big_5 | Big_5 |
| CAZyme | HRGMv2_4780_2 | HRGMv2_4780_2_9 | 12736 | 15372 | + | GH39 |
Gene ID: HRGMv2_4780_2_3
Type: TC
Location: 1717 - 3105 (+)
Type: TC
Location: 1717 - 3105 (+)
Gene ID: HRGMv2_4780_2_4
Type: TC
Location: 3136 - 4059 (+)
Type: TC
Location: 3136 - 4059 (+)
Gene ID: HRGMv2_4780_2_5
Type: TC
Location: 4076 - 4963 (+)
Type: TC
Location: 4076 - 4963 (+)
Gene ID: HRGMv2_4780_2_6
Type: CAZyme
Location: 4981 - 8337 (+)
Type: CAZyme
Location: 4981 - 8337 (+)
Gene ID: HRGMv2_4780_2_7
Type:
Location: 8359 - 10353 (+)
Type:
Location: 8359 - 10353 (+)
Gene ID: HRGMv2_4780_2_8
Type: pfam
Location: 10366 - 12714 (+)
Type: pfam
Location: 10366 - 12714 (+)
Gene ID: HRGMv2_4780_2_9
Type: CAZyme
Location: 12736 - 15372 (+)
Type: CAZyme
Location: 12736 - 15372 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
UMGS1810
Family
UMGS1810
Genus
Qingrenia
Species
Qingrenia sp022769845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.