Cluster: HRGMv2_4752_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4752
- CGC Family ID: CGCFAM_00326
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4752_1 | HRGMv2_4752_1_112 | 172091 | 173281 | + | CE4 |
| pfam | HRGMv2_4752_1 | HRGMv2_4752_1_113 | 173375 | 173983 | + | SprT-like |
| TC | HRGMv2_4752_1 | HRGMv2_4752_1_114 | 174105 | 174656 | + | 3.D.1.8.1 |
| NULL(UNKNOWN) | HRGMv2_4752_1 | HRGMv2_4752_1_115 | 174747 | 175109 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4752_1 | HRGMv2_4752_1_116 | 175154 | 176065 | - | 8.A.21.2.2 |
| pfam | HRGMv2_4752_1 | HRGMv2_4752_1_117 | 176098 | 176556 | - | NfeD |
| CAZyme | HRGMv2_4752_1 | HRGMv2_4752_1_118 | 176740 | 178443 | + | GH18 |
Gene ID: HRGMv2_4752_1_112
Type: CAZyme
Location: 172091 - 173281 (+)
Type: CAZyme
Location: 172091 - 173281 (+)
Gene ID: HRGMv2_4752_1_113
Type: pfam
Location: 173375 - 173983 (+)
Type: pfam
Location: 173375 - 173983 (+)
Gene ID: HRGMv2_4752_1_114
Type: TC
Location: 174105 - 174656 (+)
Type: TC
Location: 174105 - 174656 (+)
Gene ID: HRGMv2_4752_1_115
Type:
Location: 174747 - 175109 (+)
Type:
Location: 174747 - 175109 (+)
Gene ID: HRGMv2_4752_1_116
Type: TC
Location: 175154 - 176065 (-)
Type: TC
Location: 175154 - 176065 (-)
Gene ID: HRGMv2_4752_1_117
Type: pfam
Location: 176098 - 176556 (-)
Type: pfam
Location: 176098 - 176556 (-)
Gene ID: HRGMv2_4752_1_118
Type: CAZyme
Location: 176740 - 178443 (+)
Type: CAZyme
Location: 176740 - 178443 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
TANB77
Family
CAG-508
Genus
Merdicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.