dbCAN HGM

Cluster: HRGMv2_4749_CGC4

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_4749_8	HRGMv2_4749_8_9	6914	8233	-	4.C.1.1.7
pfam	HRGMv2_4749_8	HRGMv2_4749_8_10	8362	9528	+	Condensation
TC	HRGMv2_4749_8	HRGMv2_4749_8_11	9608	12649	+	4.C.1.1.6
NULL(UNKNOWN)	HRGMv2_4749_8	HRGMv2_4749_8_12	12653	13594	+	NULL(UNKNOWN) [View Structural Homologs]
TC	HRGMv2_4749_8	HRGMv2_4749_8_13	13710	14705	+	2.A.21.9.1
STP	HRGMv2_4749_8	HRGMv2_4749_8_14	14905	15501	+	Response_reg
TC	HRGMv2_4749_8	HRGMv2_4749_8_15	15488	15997	+	8.A.59.4.2
pfam	HRGMv2_4749_8	HRGMv2_4749_8_16	16050	18230	-	S1 \| Tex_N \| HHH_3 \| HHH_7 \| Tex_YqgF \| HHH_9 \| Tex_central_region \| S1_RRP5
CAZyme	HRGMv2_4749_8	HRGMv2_4749_8_17	18485	20401	+	GT101 \| GT2

Gene ID: HRGMv2_4749_8_9
Type: TC
Location: 6914 - 8233 (-)

Gene ID: HRGMv2_4749_8_10
Type: pfam
Location: 8362 - 9528 (+)

Gene ID: HRGMv2_4749_8_11
Type: TC
Location: 9608 - 12649 (+)

Gene ID: HRGMv2_4749_8_12
Type:
Location: 12653 - 13594 (+)

Gene ID: HRGMv2_4749_8_13
Type: TC
Location: 13710 - 14705 (+)

Gene ID: HRGMv2_4749_8_14
Type: STP
Location: 14905 - 15501 (+)

Gene ID: HRGMv2_4749_8_15
Type: TC
Location: 15488 - 15997 (+)

Gene ID: HRGMv2_4749_8_16
Type: pfam
Location: 16050 - 18230 (-)

Gene ID: HRGMv2_4749_8_17
Type: CAZyme
Location: 18485 - 20401 (+)

Taxonomic Lineage

Domain

→

Phylum

→

Class

→

Order

→

Family

→

Genus

→

Species

Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_4749_8_13	vegan > omnivore	2.39701	0.01301
HRGMv2_4749_8_16	vegan > vegetarian	1.08735	0.03657

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_4749_8_13	flexitarian > omnivore	2.10861	0.03393
HRGMv2_4749_8_13	vegan > omnivore	1.23844	0.00193
HRGMv2_4749_8_14	flexitarian > omnivore	1.20711	0.04062
HRGMv2_4749_8_14	vegan > omnivore	1.12817	0.00193
HRGMv2_4749_8_16	flexitarian > omnivore	1.22441	0.03592