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Cluster: HRGMv2_4728_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4728_9 HRGMv2_4728_9_37 43575 44564 + GT2
TC HRGMv2_4728_9 HRGMv2_4728_9_38 44730 45416 + 3.A.1.140.1
pfam HRGMv2_4728_9 HRGMv2_4728_9_39 45406 46299 + FtsX | FtsX_ECD
TC HRGMv2_4728_9 HRGMv2_4728_9_40 46314 47519 + 1.A.34.1.2
STP HRGMv2_4728_9 HRGMv2_4728_9_41 47542 48774 + Peptidase_M23
TC HRGMv2_4728_9 HRGMv2_4728_9_42 48817 50061 + 9.B.174.1.1
TC HRGMv2_4728_9 HRGMv2_4728_9_43 50126 50779 + 4.F.1.1.8
pfam HRGMv2_4728_9 HRGMv2_4728_9_44 50861 51337 + GreA_GreB | GreA_GreB_N
TF HRGMv2_4728_9 HRGMv2_4728_9_45 51459 52106 + LexA_DNA_bind
CAZyme HRGMv2_4728_9 HRGMv2_4728_9_46 52229 53929 + GH18
pfam HRGMv2_4728_9 HRGMv2_4728_9_47 54029 54553 + Ribosomal_S30AE | Ribosom_S30AE_C
pfam HRGMv2_4728_9 HRGMv2_4728_9_48 54610 55095 + VanZ
TC HRGMv2_4728_9 HRGMv2_4728_9_49 55270 55968 + 9.B.18.1.2
CAZyme HRGMv2_4728_9 HRGMv2_4728_9_50 55971 56759 + GT111
CAZyme HRGMv2_4728_9 HRGMv2_4728_9_51 56768 57763 + GT2
Gene ID: HRGMv2_4728_9_37
Type: CAZyme
Location: 43575 - 44564 (+)
Gene ID: HRGMv2_4728_9_38
Type: TC
Location: 44730 - 45416 (+)
Gene ID: HRGMv2_4728_9_39
Type: pfam
Location: 45406 - 46299 (+)
Gene ID: HRGMv2_4728_9_40
Type: TC
Location: 46314 - 47519 (+)
Gene ID: HRGMv2_4728_9_41
Type: STP
Location: 47542 - 48774 (+)
Gene ID: HRGMv2_4728_9_42
Type: TC
Location: 48817 - 50061 (+)
Gene ID: HRGMv2_4728_9_43
Type: TC
Location: 50126 - 50779 (+)
Gene ID: HRGMv2_4728_9_44
Type: pfam
Location: 50861 - 51337 (+)
Gene ID: HRGMv2_4728_9_45
Type: TF
Location: 51459 - 52106 (+)
Gene ID: HRGMv2_4728_9_46
Type: CAZyme
Location: 52229 - 53929 (+)
Gene ID: HRGMv2_4728_9_47
Type: pfam
Location: 54029 - 54553 (+)
Gene ID: HRGMv2_4728_9_48
Type: pfam
Location: 54610 - 55095 (+)
Gene ID: HRGMv2_4728_9_49
Type: TC
Location: 55270 - 55968 (+)
Gene ID: HRGMv2_4728_9_50
Type: CAZyme
Location: 55971 - 56759 (+)
Gene ID: HRGMv2_4728_9_51
Type: CAZyme
Location: 56768 - 57763 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
TANB77
→
Family
CAG-508
→
Genus
CAG-269
→
Species
CAG-269 sp934129895

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4728_9_43 vegan > omnivore 1.26824 0.01810
HRGMv2_4728_9_47 vegan > omnivore 1.30483 0.01810

🧭 Explore Read Mapping of CGC

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