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Cluster: HRGMv2_4728_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4728_3 HRGMv2_4728_3_18 11572 12558 - 9.B.157.1.1
NULL(UNKNOWN) HRGMv2_4728_3 HRGMv2_4728_3_19 12653 13009 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4728_3 HRGMv2_4728_3_20 13033 13983 - GT2
pfam HRGMv2_4728_3 HRGMv2_4728_3_21 13986 15488 - Sulfatase
pfam HRGMv2_4728_3 HRGMv2_4728_3_22 15492 16499 - adh_short | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | KR | NAD_binding_10 | GDP_Man_Dehyd
CAZyme HRGMv2_4728_3 HRGMv2_4728_3_23 16585 18603 - GH25
CAZyme HRGMv2_4728_3 HRGMv2_4728_3_24 18635 19678 - GT2
pfam HRGMv2_4728_3 HRGMv2_4728_3_25 19680 20045 - DUF2304
CAZyme HRGMv2_4728_3 HRGMv2_4728_3_26 20045 20776 - GT2
pfam HRGMv2_4728_3 HRGMv2_4728_3_27 20801 22924 - DUF7654 | DUF7657
pfam HRGMv2_4728_3 HRGMv2_4728_3_28 22945 24477 - DUF2142
CAZyme HRGMv2_4728_3 HRGMv2_4728_3_29 24499 26724 - GT2
CAZyme HRGMv2_4728_3 HRGMv2_4728_3_30 26757 28451 - GT2
NULL(UNKNOWN) HRGMv2_4728_3 HRGMv2_4728_3_31 28456 29985 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4728_3 HRGMv2_4728_3_32 30003 30899 - Lactamase_B
TC HRGMv2_4728_3 HRGMv2_4728_3_33 30907 32205 - 3.A.1.103.6
TC HRGMv2_4728_3 HRGMv2_4728_3_34 32233 33024 - 3.A.1.103.4
NULL(UNKNOWN) HRGMv2_4728_3 HRGMv2_4728_3_35 33121 33906 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_4728_3 HRGMv2_4728_3_36 33966 36461 - M14.UNA
CAZyme HRGMv2_4728_3 HRGMv2_4728_3_37 36500 37477 - GT2
Gene ID: HRGMv2_4728_3_18
Type: TC
Location: 11572 - 12558 (-)
Gene ID: HRGMv2_4728_3_19
Type:
Location: 12653 - 13009 (-)
Gene ID: HRGMv2_4728_3_20
Type: CAZyme
Location: 13033 - 13983 (-)
Gene ID: HRGMv2_4728_3_21
Type: pfam
Location: 13986 - 15488 (-)
Gene ID: HRGMv2_4728_3_22
Type: pfam
Location: 15492 - 16499 (-)
Gene ID: HRGMv2_4728_3_23
Type: CAZyme
Location: 16585 - 18603 (-)
Gene ID: HRGMv2_4728_3_24
Type: CAZyme
Location: 18635 - 19678 (-)
Gene ID: HRGMv2_4728_3_25
Type: pfam
Location: 19680 - 20045 (-)
Gene ID: HRGMv2_4728_3_26
Type: CAZyme
Location: 20045 - 20776 (-)
Gene ID: HRGMv2_4728_3_27
Type: pfam
Location: 20801 - 22924 (-)
Gene ID: HRGMv2_4728_3_28
Type: pfam
Location: 22945 - 24477 (-)
Gene ID: HRGMv2_4728_3_29
Type: CAZyme
Location: 24499 - 26724 (-)
Gene ID: HRGMv2_4728_3_30
Type: CAZyme
Location: 26757 - 28451 (-)
Gene ID: HRGMv2_4728_3_31
Type:
Location: 28456 - 29985 (-)
Gene ID: HRGMv2_4728_3_32
Type: pfam
Location: 30003 - 30899 (-)
Gene ID: HRGMv2_4728_3_33
Type: TC
Location: 30907 - 32205 (-)
Gene ID: HRGMv2_4728_3_34
Type: TC
Location: 32233 - 33024 (-)
Gene ID: HRGMv2_4728_3_35
Type:
Location: 33121 - 33906 (-)
Gene ID: HRGMv2_4728_3_36
Type: peptidase
Location: 33966 - 36461 (-)
Gene ID: HRGMv2_4728_3_37
Type: CAZyme
Location: 36500 - 37477 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
TANB77
→
Family
CAG-508
→
Genus
CAG-269
→
Species
CAG-269 sp934129895

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4728_3_22 vegan > omnivore 1.13264 0.01810

🧭 Explore Read Mapping of CGC

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