Cluster: HRGMv2_4725_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4725
- CGC Family ID: CGCFAM_01066
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4725_2 | HRGMv2_4725_2_58 | 36294 | 38081 | - | 3.A.16.1.1 |
| pfam | HRGMv2_4725_2 | HRGMv2_4725_2_59 | 38106 | 39131 | - | DUF1189 |
| pfam | HRGMv2_4725_2 | HRGMv2_4725_2_60 | 39213 | 40607 | - | tRNA-synt_1e | tRNA-synt_1g |
| CAZyme | HRGMv2_4725_2 | HRGMv2_4725_2_61 | 40680 | 43274 | - | GT51 |
| TC | HRGMv2_4725_2 | HRGMv2_4725_2_62 | 43515 | 44264 | - | 3.A.3.2.21 |
| TC | HRGMv2_4725_2 | HRGMv2_4725_2_63 | 44302 | 46146 | - | 3.A.3.2.21 |
Gene ID: HRGMv2_4725_2_58
Type: TC
Location: 36294 - 38081 (-)
Type: TC
Location: 36294 - 38081 (-)
Gene ID: HRGMv2_4725_2_59
Type: pfam
Location: 38106 - 39131 (-)
Type: pfam
Location: 38106 - 39131 (-)
Gene ID: HRGMv2_4725_2_60
Type: pfam
Location: 39213 - 40607 (-)
Type: pfam
Location: 39213 - 40607 (-)
Gene ID: HRGMv2_4725_2_61
Type: CAZyme
Location: 40680 - 43274 (-)
Type: CAZyme
Location: 40680 - 43274 (-)
Gene ID: HRGMv2_4725_2_62
Type: TC
Location: 43515 - 44264 (-)
Type: TC
Location: 43515 - 44264 (-)
Gene ID: HRGMv2_4725_2_63
Type: TC
Location: 44302 - 46146 (-)
Type: TC
Location: 44302 - 46146 (-)
Taxonomic Lineage
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.