Cluster: HRGMv2_4725_CGC1
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4725
- CGC Family ID: CGCFAM_00084
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4725_1 | HRGMv2_4725_1_33 | 28619 | 36793 | - | GH94 | GT84 |
| NULL(UNKNOWN) | HRGMv2_4725_1 | HRGMv2_4725_1_34 | 36870 | 38204 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_4725_1 | HRGMv2_4725_1_35 | 38237 | 39523 | - | Pyr_redox |
| TC | HRGMv2_4725_1 | HRGMv2_4725_1_36 | 39620 | 41638 | - | 3.A.7.7.1 |
| pfam | HRGMv2_4725_1 | HRGMv2_4725_1_37 | 41787 | 42110 | - | DUF6514 |
| CAZyme | HRGMv2_4725_1 | HRGMv2_4725_1_38 | 42386 | 43507 | - | GT28 |
| TC | HRGMv2_4725_1 | HRGMv2_4725_1_39 | 43597 | 44721 | - | 2.A.103.1.3 |
| TC | HRGMv2_4725_1 | HRGMv2_4725_1_40 | 44953 | 45807 | - | 9.B.146.1.6 |
Gene ID: HRGMv2_4725_1_33
Type: CAZyme
Location: 28619 - 36793 (-)
Type: CAZyme
Location: 28619 - 36793 (-)
Gene ID: HRGMv2_4725_1_34
Type:
Location: 36870 - 38204 (-)
Type:
Location: 36870 - 38204 (-)
Gene ID: HRGMv2_4725_1_35
Type: STP
Location: 38237 - 39523 (-)
Type: STP
Location: 38237 - 39523 (-)
Gene ID: HRGMv2_4725_1_36
Type: TC
Location: 39620 - 41638 (-)
Type: TC
Location: 39620 - 41638 (-)
Gene ID: HRGMv2_4725_1_37
Type: pfam
Location: 41787 - 42110 (-)
Type: pfam
Location: 41787 - 42110 (-)
Gene ID: HRGMv2_4725_1_38
Type: CAZyme
Location: 42386 - 43507 (-)
Type: CAZyme
Location: 42386 - 43507 (-)
Gene ID: HRGMv2_4725_1_39
Type: TC
Location: 43597 - 44721 (-)
Type: TC
Location: 43597 - 44721 (-)
Gene ID: HRGMv2_4725_1_40
Type: TC
Location: 44953 - 45807 (-)
Type: TC
Location: 44953 - 45807 (-)
Taxonomic Lineage
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.