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Cluster: HRGMv2_4724_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4724_20 HRGMv2_4724_20_1 2 1966 + GT2
peptidase HRGMv2_4724_20 HRGMv2_4724_20_2 2162 3427 - M26.UPW
TF HRGMv2_4724_20 HRGMv2_4724_20_3 3645 4667 + HTH_AraC
TC HRGMv2_4724_20 HRGMv2_4724_20_4 4807 6276 + 2.A.37.3.3
pfam HRGMv2_4724_20 HRGMv2_4724_20_5 6283 7011 + MgtC
TC HRGMv2_4724_20 HRGMv2_4724_20_6 7053 7997 + 2.A.7.3.2
NULL(UNKNOWN) HRGMv2_4724_20 HRGMv2_4724_20_7 8044 9039 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4724_20 HRGMv2_4724_20_8 9024 10907 - 3.A.16.1.2
Gene ID: HRGMv2_4724_20_1
Type: CAZyme
Location: 2 - 1966 (+)
Gene ID: HRGMv2_4724_20_2
Type: peptidase
Location: 2162 - 3427 (-)
Gene ID: HRGMv2_4724_20_3
Type: TF
Location: 3645 - 4667 (+)
Gene ID: HRGMv2_4724_20_4
Type: TC
Location: 4807 - 6276 (+)
Gene ID: HRGMv2_4724_20_5
Type: pfam
Location: 6283 - 7011 (+)
Gene ID: HRGMv2_4724_20_6
Type: TC
Location: 7053 - 7997 (+)
Gene ID: HRGMv2_4724_20_7
Type:
Location: 8044 - 9039 (+)
Gene ID: HRGMv2_4724_20_8
Type: TC
Location: 9024 - 10907 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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