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Cluster: HRGMv2_4724_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4724_12 HRGMv2_4724_12_7 10509 11675 + GH3
TC HRGMv2_4724_12 HRGMv2_4724_12_8 11745 12797 + 2.A.98.1.4
TC HRGMv2_4724_12 HRGMv2_4724_12_9 13311 14732 + 2.A.108.2.11
TC HRGMv2_4724_12 HRGMv2_4724_12_10 14818 15411 + 2.A.108.2.10
pfam HRGMv2_4724_12 HRGMv2_4724_12_11 15544 16824 + FtrD-like
TC HRGMv2_4724_12 HRGMv2_4724_12_12 16930 18216 + 3.A.1.122.8
TC HRGMv2_4724_12 HRGMv2_4724_12_13 18267 19508 + 3.A.1.122.8
TC HRGMv2_4724_12 HRGMv2_4724_12_14 19510 20226 + 3.A.1.122.8
pfam HRGMv2_4724_12 HRGMv2_4724_12_15 20282 20695 + FMN_bind
pfam HRGMv2_4724_12 HRGMv2_4724_12_16 20692 21099 + DUF4418
TC HRGMv2_4724_12 HRGMv2_4724_12_17 21116 22321 + 3.A.1.136.1
TC HRGMv2_4724_12 HRGMv2_4724_12_18 22324 23007 + 3.A.1.125.1
peptidase HRGMv2_4724_12 HRGMv2_4724_12_19 23070 24152 + M24.UPB
pfam HRGMv2_4724_12 HRGMv2_4724_12_20 24222 24947 - B3_4
TC HRGMv2_4724_12 HRGMv2_4724_12_21 24965 26383 - 2.A.118.1.3
Gene ID: HRGMv2_4724_12_7
Type: CAZyme
Location: 10509 - 11675 (+)
Gene ID: HRGMv2_4724_12_8
Type: TC
Location: 11745 - 12797 (+)
Gene ID: HRGMv2_4724_12_9
Type: TC
Location: 13311 - 14732 (+)
Gene ID: HRGMv2_4724_12_10
Type: TC
Location: 14818 - 15411 (+)
Gene ID: HRGMv2_4724_12_11
Type: pfam
Location: 15544 - 16824 (+)
Gene ID: HRGMv2_4724_12_12
Type: TC
Location: 16930 - 18216 (+)
Gene ID: HRGMv2_4724_12_13
Type: TC
Location: 18267 - 19508 (+)
Gene ID: HRGMv2_4724_12_14
Type: TC
Location: 19510 - 20226 (+)
Gene ID: HRGMv2_4724_12_15
Type: pfam
Location: 20282 - 20695 (+)
Gene ID: HRGMv2_4724_12_16
Type: pfam
Location: 20692 - 21099 (+)
Gene ID: HRGMv2_4724_12_17
Type: TC
Location: 21116 - 22321 (+)
Gene ID: HRGMv2_4724_12_18
Type: TC
Location: 22324 - 23007 (+)
Gene ID: HRGMv2_4724_12_19
Type: peptidase
Location: 23070 - 24152 (+)
Gene ID: HRGMv2_4724_12_20
Type: pfam
Location: 24222 - 24947 (-)
Gene ID: HRGMv2_4724_12_21
Type: TC
Location: 24965 - 26383 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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