Cluster: HRGMv2_4715_CGC18
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4715
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4715_31 | HRGMv2_4715_31_6 | 3728 | 5326 | + | AA4 |
| pfam | HRGMv2_4715_31 | HRGMv2_4715_31_7 | 5323 | 5700 | + | Cytochrom_C |
| TC | HRGMv2_4715_31 | HRGMv2_4715_31_8 | 6034 | 8421 | + | 1.B.14.8.6 |
Gene ID: HRGMv2_4715_31_6
Type: CAZyme
Location: 3728 - 5326 (+)
Type: CAZyme
Location: 3728 - 5326 (+)
Gene ID: HRGMv2_4715_31_7
Type: pfam
Location: 5323 - 5700 (+)
Type: pfam
Location: 5323 - 5700 (+)
Gene ID: HRGMv2_4715_31_8
Type: TC
Location: 6034 - 8421 (+)
Type: TC
Location: 6034 - 8421 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingomonadaceae
Genus
JAFAFE01
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.