Cluster: HRGMv2_4713_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4713
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4713_55 | HRGMv2_4713_55_1 | 384 | 1043 | + | 3.A.1.101.3 |
| CAZyme | HRGMv2_4713_55 | HRGMv2_4713_55_2 | 1061 | 2299 | + | GT4 |
| TC | HRGMv2_4713_55 | HRGMv2_4713_55_3 | 2347 | 3513 | + | 8.A.4.1.1 |
| CAZyme | HRGMv2_4713_55 | HRGMv2_4713_55_4 | 3964 | 5943 | - | GT2 |
| pfam | HRGMv2_4713_55 | HRGMv2_4713_55_5 | 6039 | 7610 | - | MdoG |
| CAZyme | HRGMv2_4713_55 | HRGMv2_4713_55_6 | 7905 | 9320 | + | GH35 |
Gene ID: HRGMv2_4713_55_1
Type: TC
Location: 384 - 1043 (+)
Type: TC
Location: 384 - 1043 (+)
Gene ID: HRGMv2_4713_55_2
Type: CAZyme
Location: 1061 - 2299 (+)
Type: CAZyme
Location: 1061 - 2299 (+)
Gene ID: HRGMv2_4713_55_3
Type: TC
Location: 2347 - 3513 (+)
Type: TC
Location: 2347 - 3513 (+)
Gene ID: HRGMv2_4713_55_4
Type: CAZyme
Location: 3964 - 5943 (-)
Type: CAZyme
Location: 3964 - 5943 (-)
Gene ID: HRGMv2_4713_55_5
Type: pfam
Location: 6039 - 7610 (-)
Type: pfam
Location: 6039 - 7610 (-)
Gene ID: HRGMv2_4713_55_6
Type: CAZyme
Location: 7905 - 9320 (+)
Type: CAZyme
Location: 7905 - 9320 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingomonadaceae
Genus
Zymomonas
Species
Zymomonas mobilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.