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Cluster: HRGMv2_4713_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4713_5 HRGMv2_4713_5_20 20601 21623 - 8.A.5.1.4
STP HRGMv2_4713_5 HRGMv2_4713_5_21 21764 22669 - Peripla_BP_2
TC HRGMv2_4713_5 HRGMv2_4713_5_22 22998 25109 + 1.B.14.3.1
pfam HRGMv2_4713_5 HRGMv2_4713_5_23 25176 26285 - DNA_pol3_beta | DNA_pol3_beta_2 | DNA_pol3_beta_3
TC HRGMv2_4713_5 HRGMv2_4713_5_24 26390 27982 - 3.A.1.5.21
TC HRGMv2_4713_5 HRGMv2_4713_5_25 27979 28797 - 3.A.1.5.11
TC HRGMv2_4713_5 HRGMv2_4713_5_26 28794 31265 - 3.A.1.5.11
CAZyme HRGMv2_4713_5 HRGMv2_4713_5_27 31396 32271 - CBM50 | CBM50
Gene ID: HRGMv2_4713_5_20
Type: TC
Location: 20601 - 21623 (-)
Gene ID: HRGMv2_4713_5_21
Type: STP
Location: 21764 - 22669 (-)
Gene ID: HRGMv2_4713_5_22
Type: TC
Location: 22998 - 25109 (+)
Gene ID: HRGMv2_4713_5_23
Type: pfam
Location: 25176 - 26285 (-)
Gene ID: HRGMv2_4713_5_24
Type: TC
Location: 26390 - 27982 (-)
Gene ID: HRGMv2_4713_5_25
Type: TC
Location: 27979 - 28797 (-)
Gene ID: HRGMv2_4713_5_26
Type: TC
Location: 28794 - 31265 (-)
Gene ID: HRGMv2_4713_5_27
Type: CAZyme
Location: 31396 - 32271 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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