Cluster: HRGMv2_4712_CGC7
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4712
- CGC Family ID: CGCFAM_03785
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4712_11 | HRGMv2_4712_11_20 | 20511 | 21815 | + | 3.D.6.1.2 |
| TC | HRGMv2_4712_11 | HRGMv2_4712_11_21 | 21812 | 22876 | + | 3.D.6.1.2 |
| pfam | HRGMv2_4712_11 | HRGMv2_4712_11_22 | 22873 | 23433 | + | FMN_bind |
| TC | HRGMv2_4712_11 | HRGMv2_4712_11_23 | 23430 | 24113 | + | 3.D.6.1.2 |
| TC | HRGMv2_4712_11 | HRGMv2_4712_11_24 | 24110 | 24703 | + | 3.D.6.1.2 |
| TC | HRGMv2_4712_11 | HRGMv2_4712_11_25 | 24716 | 25516 | + | 3.D.6.1.3 |
| CAZyme | HRGMv2_4712_11 | HRGMv2_4712_11_26 | 25546 | 27357 | + | GH57 |
| pfam | HRGMv2_4712_11 | HRGMv2_4712_11_27 | 27411 | 28433 | + | RF-1 | PCRF |
| NULL(UNKNOWN) | HRGMv2_4712_11 | HRGMv2_4712_11_28 | 28434 | 29711 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4712_11 | HRGMv2_4712_11_29 | 29722 | 30576 | + | 3.A.5.1.1 |
| NULL(UNKNOWN) | HRGMv2_4712_11 | HRGMv2_4712_11_30 | 30581 | 31354 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4712_11 | HRGMv2_4712_11_31 | 31371 | 32588 | + | FtsX | MacB_PCD |
| TC | HRGMv2_4712_11 | HRGMv2_4712_11_32 | 32575 | 33303 | + | 3.A.1.125.1 |
Gene ID: HRGMv2_4712_11_20
Type: TC
Location: 20511 - 21815 (+)
Type: TC
Location: 20511 - 21815 (+)
Gene ID: HRGMv2_4712_11_21
Type: TC
Location: 21812 - 22876 (+)
Type: TC
Location: 21812 - 22876 (+)
Gene ID: HRGMv2_4712_11_22
Type: pfam
Location: 22873 - 23433 (+)
Type: pfam
Location: 22873 - 23433 (+)
Gene ID: HRGMv2_4712_11_23
Type: TC
Location: 23430 - 24113 (+)
Type: TC
Location: 23430 - 24113 (+)
Gene ID: HRGMv2_4712_11_24
Type: TC
Location: 24110 - 24703 (+)
Type: TC
Location: 24110 - 24703 (+)
Gene ID: HRGMv2_4712_11_25
Type: TC
Location: 24716 - 25516 (+)
Type: TC
Location: 24716 - 25516 (+)
Gene ID: HRGMv2_4712_11_26
Type: CAZyme
Location: 25546 - 27357 (+)
Type: CAZyme
Location: 25546 - 27357 (+)
Gene ID: HRGMv2_4712_11_27
Type: pfam
Location: 27411 - 28433 (+)
Type: pfam
Location: 27411 - 28433 (+)
Gene ID: HRGMv2_4712_11_28
Type:
Location: 28434 - 29711 (+)
Type:
Location: 28434 - 29711 (+)
Gene ID: HRGMv2_4712_11_29
Type: TC
Location: 29722 - 30576 (+)
Type: TC
Location: 29722 - 30576 (+)
Gene ID: HRGMv2_4712_11_30
Type:
Location: 30581 - 31354 (+)
Type:
Location: 30581 - 31354 (+)
Gene ID: HRGMv2_4712_11_31
Type: pfam
Location: 31371 - 32588 (+)
Type: pfam
Location: 31371 - 32588 (+)
Gene ID: HRGMv2_4712_11_32
Type: TC
Location: 32575 - 33303 (+)
Type: TC
Location: 32575 - 33303 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Sphaerochaetales
Family
Sphaerochaetaceae
Genus
UBA9732
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.