Cluster: HRGMv2_4712_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4712
- CGC Family ID: CGCFAM_00021
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4712_23 | HRGMv2_4712_23_11 | 9875 | 11413 | + | 3.A.1.1.10 |
| TC | HRGMv2_4712_23 | HRGMv2_4712_23_12 | 11550 | 12494 | + | 3.A.1.1.10 |
| TC | HRGMv2_4712_23 | HRGMv2_4712_23_13 | 12510 | 13388 | + | 3.A.1.1.29 |
| pfam | HRGMv2_4712_23 | HRGMv2_4712_23_14 | 13403 | 14542 | + | AnmK |
| CAZyme | HRGMv2_4712_23 | HRGMv2_4712_23_15 | 14601 | 15737 | + | GH171 |
| CAZyme | HRGMv2_4712_23 | HRGMv2_4712_23_16 | 15779 | 17341 | + | GH3 |
Gene ID: HRGMv2_4712_23_11
Type: TC
Location: 9875 - 11413 (+)
Type: TC
Location: 9875 - 11413 (+)
Gene ID: HRGMv2_4712_23_12
Type: TC
Location: 11550 - 12494 (+)
Type: TC
Location: 11550 - 12494 (+)
Gene ID: HRGMv2_4712_23_13
Type: TC
Location: 12510 - 13388 (+)
Type: TC
Location: 12510 - 13388 (+)
Gene ID: HRGMv2_4712_23_14
Type: pfam
Location: 13403 - 14542 (+)
Type: pfam
Location: 13403 - 14542 (+)
Gene ID: HRGMv2_4712_23_15
Type: CAZyme
Location: 14601 - 15737 (+)
Type: CAZyme
Location: 14601 - 15737 (+)
Gene ID: HRGMv2_4712_23_16
Type: CAZyme
Location: 15779 - 17341 (+)
Type: CAZyme
Location: 15779 - 17341 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Sphaerochaetales
Family
Sphaerochaetaceae
Genus
UBA9732
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.