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Cluster: HRGMv2_4708_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4708_60 HRGMv2_4708_60_1 2 394 - 3.A.5.1.3
pfam HRGMv2_4708_60 HRGMv2_4708_60_2 627 1145 - Ribosomal_S30AE | Ribosom_S30AE_C
TF HRGMv2_4708_60 HRGMv2_4708_60_3 1314 1517 - CSD
TC HRGMv2_4708_60 HRGMv2_4708_60_4 1610 2329 - 3.A.1.3.24
TC HRGMv2_4708_60 HRGMv2_4708_60_5 2316 2981 - 3.A.1.3.17
TC HRGMv2_4708_60 HRGMv2_4708_60_6 3128 3922 - 3.A.1.3.2
pfam HRGMv2_4708_60 HRGMv2_4708_60_7 4017 4310 - zf_Tbcl | zf_Tbcl_2
pfam HRGMv2_4708_60 HRGMv2_4708_60_8 4390 4581 - YjfB_motility
CAZyme HRGMv2_4708_60 HRGMv2_4708_60_9 4692 6401 - GT41
TC HRGMv2_4708_60 HRGMv2_4708_60_10 6711 7754 + 3.A.1.20.1
TC HRGMv2_4708_60 HRGMv2_4708_60_11 7838 8599 + 3.A.1.1.16
Gene ID: HRGMv2_4708_60_1
Type: TC
Location: 2 - 394 (-)
Gene ID: HRGMv2_4708_60_2
Type: pfam
Location: 627 - 1145 (-)
Gene ID: HRGMv2_4708_60_3
Type: TF
Location: 1314 - 1517 (-)
Gene ID: HRGMv2_4708_60_4
Type: TC
Location: 1610 - 2329 (-)
Gene ID: HRGMv2_4708_60_5
Type: TC
Location: 2316 - 2981 (-)
Gene ID: HRGMv2_4708_60_6
Type: TC
Location: 3128 - 3922 (-)
Gene ID: HRGMv2_4708_60_7
Type: pfam
Location: 4017 - 4310 (-)
Gene ID: HRGMv2_4708_60_8
Type: pfam
Location: 4390 - 4581 (-)
Gene ID: HRGMv2_4708_60_9
Type: CAZyme
Location: 4692 - 6401 (-)
Gene ID: HRGMv2_4708_60_10
Type: TC
Location: 6711 - 7754 (+)
Gene ID: HRGMv2_4708_60_11
Type: TC
Location: 7838 - 8599 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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