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Cluster: HRGMv2_4708_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4708_4 HRGMv2_4708_4_1 3 323 + CE11
TC HRGMv2_4708_4 HRGMv2_4708_4_2 517 1512 + 3.A.1.5.20
TC HRGMv2_4708_4 HRGMv2_4708_4_3 1505 2296 + 3.A.1.5.14
TC HRGMv2_4708_4 HRGMv2_4708_4_4 2322 3266 + 3.A.1.5.1
TC HRGMv2_4708_4 HRGMv2_4708_4_5 3229 3906 + 3.A.1.5.3
TC HRGMv2_4708_4 HRGMv2_4708_4_6 3956 5854 + 1.B.14.1.13
STP HRGMv2_4708_4 HRGMv2_4708_4_7 5867 7534 + SBP_bac_5
TC HRGMv2_4708_4 HRGMv2_4708_4_8 7581 9533 + 1.B.14.1.26
Gene ID: HRGMv2_4708_4_1
Type: CAZyme
Location: 3 - 323 (+)
Gene ID: HRGMv2_4708_4_2
Type: TC
Location: 517 - 1512 (+)
Gene ID: HRGMv2_4708_4_3
Type: TC
Location: 1505 - 2296 (+)
Gene ID: HRGMv2_4708_4_4
Type: TC
Location: 2322 - 3266 (+)
Gene ID: HRGMv2_4708_4_5
Type: TC
Location: 3229 - 3906 (+)
Gene ID: HRGMv2_4708_4_6
Type: TC
Location: 3956 - 5854 (+)
Gene ID: HRGMv2_4708_4_7
Type: STP
Location: 5867 - 7534 (+)
Gene ID: HRGMv2_4708_4_8
Type: TC
Location: 7581 - 9533 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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