dbCAN Logo

Cluster: HRGMv2_4706_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4706_1 HRGMv2_4706_1_48 52295 53689 + 2.A.1.1.26
TC HRGMv2_4706_1 HRGMv2_4706_1_49 53720 54031 + 4.A.3.1.2
TF HRGMv2_4706_1 HRGMv2_4706_1_50 54090 54941 - HTH_AraC | HTH_AraC
pfam HRGMv2_4706_1 HRGMv2_4706_1_51 55382 56269 + AP_endonuc_2
TC HRGMv2_4706_1 HRGMv2_4706_1_52 56334 57749 + 2.A.8.1.13
TC HRGMv2_4706_1 HRGMv2_4706_1_53 57774 58676 + 2.A.7.3.36
CAZyme HRGMv2_4706_1 HRGMv2_4706_1_54 58738 61326 - GH38
TC HRGMv2_4706_1 HRGMv2_4706_1_55 61400 62467 - 4.A.2.1.10
TC HRGMv2_4706_1 HRGMv2_4706_1_56 62496 62801 - 4.A.2.1.10
TC HRGMv2_4706_1 HRGMv2_4706_1_57 62798 63268 - 4.A.2.1.23
Gene ID: HRGMv2_4706_1_48
Type: TC
Location: 52295 - 53689 (+)
Gene ID: HRGMv2_4706_1_49
Type: TC
Location: 53720 - 54031 (+)
Gene ID: HRGMv2_4706_1_50
Type: TF
Location: 54090 - 54941 (-)
Gene ID: HRGMv2_4706_1_51
Type: pfam
Location: 55382 - 56269 (+)
Gene ID: HRGMv2_4706_1_52
Type: TC
Location: 56334 - 57749 (+)
Gene ID: HRGMv2_4706_1_53
Type: TC
Location: 57774 - 58676 (+)
Gene ID: HRGMv2_4706_1_54
Type: CAZyme
Location: 58738 - 61326 (-)
Gene ID: HRGMv2_4706_1_55
Type: TC
Location: 61400 - 62467 (-)
Gene ID: HRGMv2_4706_1_56
Type: TC
Location: 62496 - 62801 (-)
Gene ID: HRGMv2_4706_1_57
Type: TC
Location: 62798 - 63268 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_C
→
Class
Negativicutes
→
Order
Selenomonadales
→
Family
Selenomonadaceae
→
Genus
Megamonas
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List