Cluster: HRGMv2_4706_CGC32
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4706
- CGC Family ID: CGCFAM_07983
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4706_18 | HRGMv2_4706_18_27 | 29912 | 31792 | + | 4.A.1.2.1 |
| TF | HRGMv2_4706_18 | HRGMv2_4706_18_28 | 31816 | 32811 | + | LacI |
| CAZyme | HRGMv2_4706_18 | HRGMv2_4706_18_29 | 32847 | 34184 | + | GH32 |
| pfam | HRGMv2_4706_18 | HRGMv2_4706_18_30 | 34290 | 34931 | - | Hydrolase | Hydrolase_like | HAD_2 |
| TC | HRGMv2_4706_18 | HRGMv2_4706_18_31 | 34994 | 35935 | - | 2.A.69.4.5 |
| peptidase | HRGMv2_4706_18 | HRGMv2_4706_18_32 | 35968 | 37182 | - | S11.004 |
| pfam | HRGMv2_4706_18 | HRGMv2_4706_18_33 | 37179 | 37619 | - | 4HBT |
| TC | HRGMv2_4706_18 | HRGMv2_4706_18_34 | 37917 | 38180 | + | 8.A.8.1.1 |
| TC | HRGMv2_4706_18 | HRGMv2_4706_18_35 | 38220 | 39926 | + | 8.A.7.1.1 |
| NULL(UNKNOWN) | HRGMv2_4706_18 | HRGMv2_4706_18_36 | 39933 | 40295 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4706_18 | HRGMv2_4706_18_37 | 40412 | 41665 | - | 2.A.23.4.1 |
| TC | HRGMv2_4706_18 | HRGMv2_4706_18_38 | 42237 | 42899 | - | 9.B.20.1.4 |
| TC | HRGMv2_4706_18 | HRGMv2_4706_18_39 | 43615 | 44919 | + | 1.B.23.1.23 |
Gene ID: HRGMv2_4706_18_27
Type: TC
Location: 29912 - 31792 (+)
Type: TC
Location: 29912 - 31792 (+)
Gene ID: HRGMv2_4706_18_28
Type: TF
Location: 31816 - 32811 (+)
Type: TF
Location: 31816 - 32811 (+)
Gene ID: HRGMv2_4706_18_29
Type: CAZyme
Location: 32847 - 34184 (+)
Type: CAZyme
Location: 32847 - 34184 (+)
Gene ID: HRGMv2_4706_18_30
Type: pfam
Location: 34290 - 34931 (-)
Type: pfam
Location: 34290 - 34931 (-)
Gene ID: HRGMv2_4706_18_31
Type: TC
Location: 34994 - 35935 (-)
Type: TC
Location: 34994 - 35935 (-)
Gene ID: HRGMv2_4706_18_32
Type: peptidase
Location: 35968 - 37182 (-)
Type: peptidase
Location: 35968 - 37182 (-)
Gene ID: HRGMv2_4706_18_33
Type: pfam
Location: 37179 - 37619 (-)
Type: pfam
Location: 37179 - 37619 (-)
Gene ID: HRGMv2_4706_18_34
Type: TC
Location: 37917 - 38180 (+)
Type: TC
Location: 37917 - 38180 (+)
Gene ID: HRGMv2_4706_18_35
Type: TC
Location: 38220 - 39926 (+)
Type: TC
Location: 38220 - 39926 (+)
Gene ID: HRGMv2_4706_18_36
Type:
Location: 39933 - 40295 (+)
Type:
Location: 39933 - 40295 (+)
Gene ID: HRGMv2_4706_18_37
Type: TC
Location: 40412 - 41665 (-)
Type: TC
Location: 40412 - 41665 (-)
Gene ID: HRGMv2_4706_18_38
Type: TC
Location: 42237 - 42899 (-)
Type: TC
Location: 42237 - 42899 (-)
Gene ID: HRGMv2_4706_18_39
Type: TC
Location: 43615 - 44919 (+)
Type: TC
Location: 43615 - 44919 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Selenomonadales
Family
Selenomonadaceae
Genus
Megamonas
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.