Cluster: HRGMv2_4705_CGC4
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4705
- CGC Family ID: CGCFAM_02877
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4705_3 | HRGMv2_4705_3_171 | 163255 | 165069 | - | GH23 |
| pfam | HRGMv2_4705_3 | HRGMv2_4705_3_172 | 165082 | 165837 | - | TrbL |
| NULL(UNKNOWN) | HRGMv2_4705_3 | HRGMv2_4705_3_173 | 166238 | 167026 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4705_3 | HRGMv2_4705_3_174 | 167027 | 169519 | - | 3.A.7.4.2 |
| pfam | HRGMv2_4705_3 | HRGMv2_4705_3_175 | 169534 | 169797 | - | VirB3 |
| NULL(UNKNOWN) | HRGMv2_4705_3 | HRGMv2_4705_3_176 | 169798 | 170199 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4705_3 | HRGMv2_4705_3_177 | 170213 | 171196 | - | 3.A.7.4.2 |
| NULL(UNKNOWN) | HRGMv2_4705_3 | HRGMv2_4705_3_178 | 171180 | 171533 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4705_3 | HRGMv2_4705_3_179 | 171537 | 173879 | - | 3.A.7.4.2 |
| TC | HRGMv2_4705_3 | HRGMv2_4705_3_180 | 173869 | 175155 | - | 3.A.7.4.2 |
| TC | HRGMv2_4705_3 | HRGMv2_4705_3_181 | 175152 | 175970 | - | 3.A.7.4.2 |
| TC | HRGMv2_4705_3 | HRGMv2_4705_3_182 | 175967 | 176671 | - | 3.A.7.4.2 |
Gene ID: HRGMv2_4705_3_171
Type: CAZyme
Location: 163255 - 165069 (-)
Type: CAZyme
Location: 163255 - 165069 (-)
Gene ID: HRGMv2_4705_3_172
Type: pfam
Location: 165082 - 165837 (-)
Type: pfam
Location: 165082 - 165837 (-)
Gene ID: HRGMv2_4705_3_173
Type:
Location: 166238 - 167026 (-)
Type:
Location: 166238 - 167026 (-)
Gene ID: HRGMv2_4705_3_174
Type: TC
Location: 167027 - 169519 (-)
Type: TC
Location: 167027 - 169519 (-)
Gene ID: HRGMv2_4705_3_175
Type: pfam
Location: 169534 - 169797 (-)
Type: pfam
Location: 169534 - 169797 (-)
Gene ID: HRGMv2_4705_3_176
Type:
Location: 169798 - 170199 (-)
Type:
Location: 169798 - 170199 (-)
Gene ID: HRGMv2_4705_3_177
Type: TC
Location: 170213 - 171196 (-)
Type: TC
Location: 170213 - 171196 (-)
Gene ID: HRGMv2_4705_3_178
Type:
Location: 171180 - 171533 (-)
Type:
Location: 171180 - 171533 (-)
Gene ID: HRGMv2_4705_3_179
Type: TC
Location: 171537 - 173879 (-)
Type: TC
Location: 171537 - 173879 (-)
Gene ID: HRGMv2_4705_3_180
Type: TC
Location: 173869 - 175155 (-)
Type: TC
Location: 173869 - 175155 (-)
Gene ID: HRGMv2_4705_3_181
Type: TC
Location: 175152 - 175970 (-)
Type: TC
Location: 175152 - 175970 (-)
Gene ID: HRGMv2_4705_3_182
Type: TC
Location: 175967 - 176671 (-)
Type: TC
Location: 175967 - 176671 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Selenomonadales
Family
Selenomonadaceae
Genus
Megamonas
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.