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Cluster: HRGMv2_4704_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4704_20 HRGMv2_4704_20_24 22783 24876 - GH13_11
STP HRGMv2_4704_20 HRGMv2_4704_20_25 24897 25238 - STAS
TC HRGMv2_4704_20 HRGMv2_4704_20_26 25586 27484 - 4.A.2.1.4
STP HRGMv2_4704_20 HRGMv2_4704_20_27 27509 28417 - PfkB
TF HRGMv2_4704_20 HRGMv2_4704_20_28 28418 29161 - HTH_DeoR
TC HRGMv2_4704_20 HRGMv2_4704_20_29 29360 30232 + 2.A.115.1.2
TC HRGMv2_4704_20 HRGMv2_4704_20_30 30508 31608 + 3.D.7.2.3
TC HRGMv2_4704_20 HRGMv2_4704_20_31 31615 33519 + 3.D.7.2.3
Gene ID: HRGMv2_4704_20_24
Type: CAZyme
Location: 22783 - 24876 (-)
Gene ID: HRGMv2_4704_20_25
Type: STP
Location: 24897 - 25238 (-)
Gene ID: HRGMv2_4704_20_26
Type: TC
Location: 25586 - 27484 (-)
Gene ID: HRGMv2_4704_20_27
Type: STP
Location: 27509 - 28417 (-)
Gene ID: HRGMv2_4704_20_28
Type: TF
Location: 28418 - 29161 (-)
Gene ID: HRGMv2_4704_20_29
Type: TC
Location: 29360 - 30232 (+)
Gene ID: HRGMv2_4704_20_30
Type: TC
Location: 30508 - 31608 (+)
Gene ID: HRGMv2_4704_20_31
Type: TC
Location: 31615 - 33519 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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