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Cluster: HRGMv2_4704_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4704_18 HRGMv2_4704_18_28 28174 29538 + 4.A.1.2.9
CAZyme HRGMv2_4704_18 HRGMv2_4704_18_29 29541 30608 + GH170
STP HRGMv2_4704_18 HRGMv2_4704_18_30 30763 31701 + PALP
TC HRGMv2_4704_18 HRGMv2_4704_18_31 32314 32625 - 4.A.3.1.2
TC HRGMv2_4704_18 HRGMv2_4704_18_32 32656 34053 - 2.A.1.1.26
pfam HRGMv2_4704_18 HRGMv2_4704_18_33 34195 35115 - AP_endonuc_2
pfam HRGMv2_4704_18 HRGMv2_4704_18_34 35237 36070 - AP_endonuc_2
CAZyme HRGMv2_4704_18 HRGMv2_4704_18_35 36145 37152 - GH177
Gene ID: HRGMv2_4704_18_28
Type: TC
Location: 28174 - 29538 (+)
Gene ID: HRGMv2_4704_18_29
Type: CAZyme
Location: 29541 - 30608 (+)
Gene ID: HRGMv2_4704_18_30
Type: STP
Location: 30763 - 31701 (+)
Gene ID: HRGMv2_4704_18_31
Type: TC
Location: 32314 - 32625 (-)
Gene ID: HRGMv2_4704_18_32
Type: TC
Location: 32656 - 34053 (-)
Gene ID: HRGMv2_4704_18_33
Type: pfam
Location: 34195 - 35115 (-)
Gene ID: HRGMv2_4704_18_34
Type: pfam
Location: 35237 - 36070 (-)
Gene ID: HRGMv2_4704_18_35
Type: CAZyme
Location: 36145 - 37152 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4704_18_34 vegan > omnivore 4.76661 0.00581

🧭 Explore Read Mapping of CGC

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