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Cluster: HRGMv2_4704_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4704_6 HRGMv2_4704_6_1 1 1374 + 9.B.18.1.2
pfam HRGMv2_4704_6 HRGMv2_4704_6_2 1377 2744 + NTP_transferase | MannoseP_isomer | Cupin_2 | NTP_transf_3 | ManC_GMP_beta-helix
CAZyme HRGMv2_4704_6 HRGMv2_4704_6_3 2758 3822 + GT4
pfam HRGMv2_4704_6 HRGMv2_4704_6_4 3925 4911 + Epimerase | GDP_Man_Dehyd
pfam HRGMv2_4704_6 HRGMv2_4704_6_5 4911 5861 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | GDP_Man_Dehyd
CAZyme HRGMv2_4704_6 HRGMv2_4704_6_6 5882 7051 + GT4
NULL(UNKNOWN) HRGMv2_4704_6 HRGMv2_4704_6_7 7054 8325 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4704_6 HRGMv2_4704_6_8 8373 9563 + Capsule_synth
TC HRGMv2_4704_6 HRGMv2_4704_6_9 9590 10837 + 2.A.66.2.10
Gene ID: HRGMv2_4704_6_1
Type: TC
Location: 1 - 1374 (+)
Gene ID: HRGMv2_4704_6_2
Type: pfam
Location: 1377 - 2744 (+)
Gene ID: HRGMv2_4704_6_3
Type: CAZyme
Location: 2758 - 3822 (+)
Gene ID: HRGMv2_4704_6_4
Type: pfam
Location: 3925 - 4911 (+)
Gene ID: HRGMv2_4704_6_5
Type: pfam
Location: 4911 - 5861 (+)
Gene ID: HRGMv2_4704_6_6
Type: CAZyme
Location: 5882 - 7051 (+)
Gene ID: HRGMv2_4704_6_7
Type:
Location: 7054 - 8325 (+)
Gene ID: HRGMv2_4704_6_8
Type: pfam
Location: 8373 - 9563 (+)
Gene ID: HRGMv2_4704_6_9
Type: TC
Location: 9590 - 10837 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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