Cluster: HRGMv2_4703_CGC29
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4703
- CGC Family ID: CGCFAM_10376
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4703_48 | HRGMv2_4703_48_2 | 670 | 2373 | - | GH13_31 |
| TC | HRGMv2_4703_48 | HRGMv2_4703_48_3 | 2609 | 3886 | + | 2.A.45.2.2 |
| TC | HRGMv2_4703_48 | HRGMv2_4703_48_4 | 4383 | 5645 | + | 2.A.1.14.3 |
| STP | HRGMv2_4703_48 | HRGMv2_4703_48_5 | 5787 | 6197 | - | Hemerythrin |
| TC | HRGMv2_4703_48 | HRGMv2_4703_48_6 | 6476 | 8278 | + | 1.B.52.2.1 |
Gene ID: HRGMv2_4703_48_2
Type: CAZyme
Location: 670 - 2373 (-)
Type: CAZyme
Location: 670 - 2373 (-)
Gene ID: HRGMv2_4703_48_3
Type: TC
Location: 2609 - 3886 (+)
Type: TC
Location: 2609 - 3886 (+)
Gene ID: HRGMv2_4703_48_4
Type: TC
Location: 4383 - 5645 (+)
Type: TC
Location: 4383 - 5645 (+)
Gene ID: HRGMv2_4703_48_5
Type: STP
Location: 5787 - 6197 (-)
Type: STP
Location: 5787 - 6197 (-)
Gene ID: HRGMv2_4703_48_6
Type: TC
Location: 6476 - 8278 (+)
Type: TC
Location: 6476 - 8278 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Selenomonadales
Family
Selenomonadaceae
Genus
Selenomonas_C
Species
Selenomonas_C sp002351185
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4703_48_2 | vegan > omnivore | 1.68091 | 0.03201 |
| HRGMv2_4703_48_3 | vegan > omnivore | 1.05239 | 0.03201 |