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Cluster: HRGMv2_4703_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4703_32 HRGMv2_4703_32_4 4386 6260 - 4.A.2.1.2
TF HRGMv2_4703_32 HRGMv2_4703_32_5 6548 7333 + HTH_DeoR
TC HRGMv2_4703_32 HRGMv2_4703_32_6 7460 8896 - 2.A.22.5.3
TC HRGMv2_4703_32 HRGMv2_4703_32_7 9059 10072 + 3.A.1.34.1
TC HRGMv2_4703_32 HRGMv2_4703_32_8 10209 11093 + 3.A.1.34.1
TC HRGMv2_4703_32 HRGMv2_4703_32_9 11093 11887 + 3.A.1.34.1
pfam HRGMv2_4703_32 HRGMv2_4703_32_10 12148 13011 - PseudoU_synth_1 | PseudoU_synth_1
TC HRGMv2_4703_32 HRGMv2_4703_32_11 13024 13821 - 3.A.1.26.7
TC HRGMv2_4703_32 HRGMv2_4703_32_12 13811 14707 - 3.A.1.26.7
TC HRGMv2_4703_32 HRGMv2_4703_32_13 14697 15551 - 3.A.1.26.7
pfam HRGMv2_4703_32 HRGMv2_4703_32_14 15800 16891 - Hydrolase | HAD
pfam HRGMv2_4703_32 HRGMv2_4703_32_15 17036 17422 - Ribonuc_L-PSP
CAZyme HRGMv2_4703_32 HRGMv2_4703_32_16 17648 19438 - GH9
CAZyme HRGMv2_4703_32 HRGMv2_4703_32_17 19443 20228 - GH16_21
CAZyme HRGMv2_4703_32 HRGMv2_4703_32_18 20297 21739 - GH1
TC HRGMv2_4703_32 HRGMv2_4703_32_19 21736 22062 - 4.A.3.2.9
TC HRGMv2_4703_32 HRGMv2_4703_32_20 22068 22370 - 4.A.3.2.5
TC HRGMv2_4703_32 HRGMv2_4703_32_21 22476 23765 - 1.B.23.1.3
TC HRGMv2_4703_32 HRGMv2_4703_32_22 23825 25138 - 4.A.3.2.8
Gene ID: HRGMv2_4703_32_4
Type: TC
Location: 4386 - 6260 (-)
Gene ID: HRGMv2_4703_32_5
Type: TF
Location: 6548 - 7333 (+)
Gene ID: HRGMv2_4703_32_6
Type: TC
Location: 7460 - 8896 (-)
Gene ID: HRGMv2_4703_32_7
Type: TC
Location: 9059 - 10072 (+)
Gene ID: HRGMv2_4703_32_8
Type: TC
Location: 10209 - 11093 (+)
Gene ID: HRGMv2_4703_32_9
Type: TC
Location: 11093 - 11887 (+)
Gene ID: HRGMv2_4703_32_10
Type: pfam
Location: 12148 - 13011 (-)
Gene ID: HRGMv2_4703_32_11
Type: TC
Location: 13024 - 13821 (-)
Gene ID: HRGMv2_4703_32_12
Type: TC
Location: 13811 - 14707 (-)
Gene ID: HRGMv2_4703_32_13
Type: TC
Location: 14697 - 15551 (-)
Gene ID: HRGMv2_4703_32_14
Type: pfam
Location: 15800 - 16891 (-)
Gene ID: HRGMv2_4703_32_15
Type: pfam
Location: 17036 - 17422 (-)
Gene ID: HRGMv2_4703_32_16
Type: CAZyme
Location: 17648 - 19438 (-)
Gene ID: HRGMv2_4703_32_17
Type: CAZyme
Location: 19443 - 20228 (-)
Gene ID: HRGMv2_4703_32_18
Type: CAZyme
Location: 20297 - 21739 (-)
Gene ID: HRGMv2_4703_32_19
Type: TC
Location: 21736 - 22062 (-)
Gene ID: HRGMv2_4703_32_20
Type: TC
Location: 22068 - 22370 (-)
Gene ID: HRGMv2_4703_32_21
Type: TC
Location: 22476 - 23765 (-)
Gene ID: HRGMv2_4703_32_22
Type: TC
Location: 23825 - 25138 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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