Cluster: HRGMv2_4702_CGC33
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4702
- CGC Family ID: CGCFAM_10671
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4702_22 | HRGMv2_4702_22_26 | 27209 | 28825 | + | 2.A.36.6.3 |
| TC | HRGMv2_4702_22 | HRGMv2_4702_22_27 | 28864 | 30027 | - | 2.A.1.60.3 |
| sulfatase | HRGMv2_4702_22 | HRGMv2_4702_22_28 | 30299 | 31921 | + | S1_23 |
| CAZyme | HRGMv2_4702_22 | HRGMv2_4702_22_29 | 32575 | 34020 | - | GH1 |
| CAZyme | HRGMv2_4702_22 | HRGMv2_4702_22_30 | 34039 | 34845 | - | GH1 |
| CAZyme | HRGMv2_4702_22 | HRGMv2_4702_22_31 | 34876 | 35487 | - | GH1 |
| pfam | HRGMv2_4702_22 | HRGMv2_4702_22_32 | 35509 | 35832 | - | PTS_IIA |
| TC | HRGMv2_4702_22 | HRGMv2_4702_22_33 | 35864 | 36166 | - | 4.A.3.2.6 |
| TC | HRGMv2_4702_22 | HRGMv2_4702_22_34 | 36529 | 37833 | - | 4.A.3.2.2 |
| TF | HRGMv2_4702_22 | HRGMv2_4702_22_35 | 38123 | 39010 | - | HTH_6 |
| TC | HRGMv2_4702_22 | HRGMv2_4702_22_36 | 39090 | 40271 | - | 2.A.1.60.3 |
| TF | HRGMv2_4702_22 | HRGMv2_4702_22_37 | 40429 | 40857 | + | MarR |
| TC | HRGMv2_4702_22 | HRGMv2_4702_22_38 | 40857 | 41525 | + | 2.A.115.2.8 |
Gene ID: HRGMv2_4702_22_26
Type: TC
Location: 27209 - 28825 (+)
Type: TC
Location: 27209 - 28825 (+)
Gene ID: HRGMv2_4702_22_27
Type: TC
Location: 28864 - 30027 (-)
Type: TC
Location: 28864 - 30027 (-)
Gene ID: HRGMv2_4702_22_28
Type: sulfatase
Location: 30299 - 31921 (+)
Type: sulfatase
Location: 30299 - 31921 (+)
Gene ID: HRGMv2_4702_22_29
Type: CAZyme
Location: 32575 - 34020 (-)
Type: CAZyme
Location: 32575 - 34020 (-)
Gene ID: HRGMv2_4702_22_30
Type: CAZyme
Location: 34039 - 34845 (-)
Type: CAZyme
Location: 34039 - 34845 (-)
Gene ID: HRGMv2_4702_22_31
Type: CAZyme
Location: 34876 - 35487 (-)
Type: CAZyme
Location: 34876 - 35487 (-)
Gene ID: HRGMv2_4702_22_32
Type: pfam
Location: 35509 - 35832 (-)
Type: pfam
Location: 35509 - 35832 (-)
Gene ID: HRGMv2_4702_22_33
Type: TC
Location: 35864 - 36166 (-)
Type: TC
Location: 35864 - 36166 (-)
Gene ID: HRGMv2_4702_22_34
Type: TC
Location: 36529 - 37833 (-)
Type: TC
Location: 36529 - 37833 (-)
Gene ID: HRGMv2_4702_22_35
Type: TF
Location: 38123 - 39010 (-)
Type: TF
Location: 38123 - 39010 (-)
Gene ID: HRGMv2_4702_22_36
Type: TC
Location: 39090 - 40271 (-)
Type: TC
Location: 39090 - 40271 (-)
Gene ID: HRGMv2_4702_22_37
Type: TF
Location: 40429 - 40857 (+)
Type: TF
Location: 40429 - 40857 (+)
Gene ID: HRGMv2_4702_22_38
Type: TC
Location: 40857 - 41525 (+)
Type: TC
Location: 40857 - 41525 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Selenomonadales
Family
Selenomonadaceae
Genus
Megamonas
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.