Cluster: HRGMv2_4702_CGC30
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4702
- CGC Family ID: CGCFAM_01471
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4702_18 | HRGMv2_4702_18_36 | 39522 | 40850 | + | 4.A.3.2.8 |
| TC | HRGMv2_4702_18 | HRGMv2_4702_18_37 | 40928 | 42439 | + | 1.B.23.1.3 |
| TC | HRGMv2_4702_18 | HRGMv2_4702_18_38 | 42486 | 42788 | + | 4.A.3.2.4 |
| TC | HRGMv2_4702_18 | HRGMv2_4702_18_39 | 42796 | 43119 | + | 4.A.3.2.8 |
| CAZyme | HRGMv2_4702_18 | HRGMv2_4702_18_40 | 43121 | 44542 | + | GH1 |
| CAZyme | HRGMv2_4702_18 | HRGMv2_4702_18_41 | 44570 | 45355 | + | GH16_21 |
| CAZyme | HRGMv2_4702_18 | HRGMv2_4702_18_42 | 45370 | 47169 | + | GH9 |
Gene ID: HRGMv2_4702_18_36
Type: TC
Location: 39522 - 40850 (+)
Type: TC
Location: 39522 - 40850 (+)
Gene ID: HRGMv2_4702_18_37
Type: TC
Location: 40928 - 42439 (+)
Type: TC
Location: 40928 - 42439 (+)
Gene ID: HRGMv2_4702_18_38
Type: TC
Location: 42486 - 42788 (+)
Type: TC
Location: 42486 - 42788 (+)
Gene ID: HRGMv2_4702_18_39
Type: TC
Location: 42796 - 43119 (+)
Type: TC
Location: 42796 - 43119 (+)
Gene ID: HRGMv2_4702_18_40
Type: CAZyme
Location: 43121 - 44542 (+)
Type: CAZyme
Location: 43121 - 44542 (+)
Gene ID: HRGMv2_4702_18_41
Type: CAZyme
Location: 44570 - 45355 (+)
Type: CAZyme
Location: 44570 - 45355 (+)
Gene ID: HRGMv2_4702_18_42
Type: CAZyme
Location: 45370 - 47169 (+)
Type: CAZyme
Location: 45370 - 47169 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Selenomonadales
Family
Selenomonadaceae
Genus
Megamonas
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.