Cluster: HRGMv2_4702_CGC22
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4702
- CGC Family ID: CGCFAM_10670
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4702_10 | HRGMv2_4702_10_50 | 53667 | 54983 | + | 2.A.1.14.3 |
| pfam | HRGMv2_4702_10 | HRGMv2_4702_10_51 | 55035 | 55913 | + | PDH_N | 2-Hacid_dh_C | NAD_binding_2 | F420_oxidored | KARI_N | NAD_binding_11 |
| TF | HRGMv2_4702_10 | HRGMv2_4702_10_52 | 56110 | 56805 | - | GntR |
| CAZyme | HRGMv2_4702_10 | HRGMv2_4702_10_53 | 57039 | 58688 | + | GT83 |
| STP | HRGMv2_4702_10 | HRGMv2_4702_10_54 | 58714 | 59880 | + | Aminotran_1_2 |
| CAZyme | HRGMv2_4702_10 | HRGMv2_4702_10_55 | 59888 | 60835 | + | GT2 |
Gene ID: HRGMv2_4702_10_50
Type: TC
Location: 53667 - 54983 (+)
Type: TC
Location: 53667 - 54983 (+)
Gene ID: HRGMv2_4702_10_51
Type: pfam
Location: 55035 - 55913 (+)
Type: pfam
Location: 55035 - 55913 (+)
Gene ID: HRGMv2_4702_10_52
Type: TF
Location: 56110 - 56805 (-)
Type: TF
Location: 56110 - 56805 (-)
Gene ID: HRGMv2_4702_10_53
Type: CAZyme
Location: 57039 - 58688 (+)
Type: CAZyme
Location: 57039 - 58688 (+)
Gene ID: HRGMv2_4702_10_54
Type: STP
Location: 58714 - 59880 (+)
Type: STP
Location: 58714 - 59880 (+)
Gene ID: HRGMv2_4702_10_55
Type: CAZyme
Location: 59888 - 60835 (+)
Type: CAZyme
Location: 59888 - 60835 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Selenomonadales
Family
Selenomonadaceae
Genus
Megamonas
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.