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Cluster: HRGMv2_4700_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4700_3 HRGMv2_4700_3_1 1 666 - GT2
TC HRGMv2_4700_3 HRGMv2_4700_3_2 663 1838 - 3.A.1.103.1
pfam HRGMv2_4700_3 HRGMv2_4700_3_3 1835 2659 - ABC2_membrane
CAZyme HRGMv2_4700_3 HRGMv2_4700_3_4 2698 3696 + GT2
pfam HRGMv2_4700_3 HRGMv2_4700_3_5 3693 4748 + Ligase_CoA | ATP-grasp_2
pfam HRGMv2_4700_3 HRGMv2_4700_3_6 4741 5592 + Ligase_CoA | CoA_binding | CoA_binding_2 | Succ_CoA_lig
CAZyme HRGMv2_4700_3 HRGMv2_4700_3_7 5592 6551 + GT2
pfam HRGMv2_4700_3 HRGMv2_4700_3_8 6538 6942 + GtrA_DPMS_TM
CAZyme HRGMv2_4700_3 HRGMv2_4700_3_9 6971 8059 + GT4
pfam HRGMv2_4700_3 HRGMv2_4700_3_10 8061 8516 - R3H
TC HRGMv2_4700_3 HRGMv2_4700_3_11 8518 9459 - 2.A.9.3.2
Gene ID: HRGMv2_4700_3_1
Type: CAZyme
Location: 1 - 666 (-)
Gene ID: HRGMv2_4700_3_2
Type: TC
Location: 663 - 1838 (-)
Gene ID: HRGMv2_4700_3_3
Type: pfam
Location: 1835 - 2659 (-)
Gene ID: HRGMv2_4700_3_4
Type: CAZyme
Location: 2698 - 3696 (+)
Gene ID: HRGMv2_4700_3_5
Type: pfam
Location: 3693 - 4748 (+)
Gene ID: HRGMv2_4700_3_6
Type: pfam
Location: 4741 - 5592 (+)
Gene ID: HRGMv2_4700_3_7
Type: CAZyme
Location: 5592 - 6551 (+)
Gene ID: HRGMv2_4700_3_8
Type: pfam
Location: 6538 - 6942 (+)
Gene ID: HRGMv2_4700_3_9
Type: CAZyme
Location: 6971 - 8059 (+)
Gene ID: HRGMv2_4700_3_10
Type: pfam
Location: 8061 - 8516 (-)
Gene ID: HRGMv2_4700_3_11
Type: TC
Location: 8518 - 9459 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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