Cluster: HRGMv2_4696_CGC18
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4696
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4696_4 | HRGMv2_4696_4_8 | 6956 | 7285 | - | 2.A.123.4.1 |
| CAZyme | HRGMv2_4696_4 | HRGMv2_4696_4_9 | 7278 | 8009 | - | GT2 |
| peptidase | HRGMv2_4696_4 | HRGMv2_4696_4_10 | 8187 | 9158 | - | S33.UPW |
| NULL(UNKNOWN) | HRGMv2_4696_4 | HRGMv2_4696_4_11 | 9313 | 9516 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4696_4 | HRGMv2_4696_4_12 | 9607 | 11256 | + | 3.A.1.120.6 |
| pfam | HRGMv2_4696_4 | HRGMv2_4696_4_13 | 11459 | 12229 | + | Methyltransf_2 | FtsJ | MTS | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| TC | HRGMv2_4696_4 | HRGMv2_4696_4_14 | 12780 | 14117 | + | 2.A.1.6.3 |
Gene ID: HRGMv2_4696_4_8
Type: TC
Location: 6956 - 7285 (-)
Type: TC
Location: 6956 - 7285 (-)
Gene ID: HRGMv2_4696_4_9
Type: CAZyme
Location: 7278 - 8009 (-)
Type: CAZyme
Location: 7278 - 8009 (-)
Gene ID: HRGMv2_4696_4_10
Type: peptidase
Location: 8187 - 9158 (-)
Type: peptidase
Location: 8187 - 9158 (-)
Gene ID: HRGMv2_4696_4_11
Type:
Location: 9313 - 9516 (-)
Type:
Location: 9313 - 9516 (-)
Gene ID: HRGMv2_4696_4_12
Type: TC
Location: 9607 - 11256 (+)
Type: TC
Location: 9607 - 11256 (+)
Gene ID: HRGMv2_4696_4_13
Type: pfam
Location: 11459 - 12229 (+)
Type: pfam
Location: 11459 - 12229 (+)
Gene ID: HRGMv2_4696_4_14
Type: TC
Location: 12780 - 14117 (+)
Type: TC
Location: 12780 - 14117 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhizobiales
Family
Rhizobiaceae
Genus
Ochrobactrum
Species
Ochrobactrum anthropi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.