Cluster: HRGMv2_4695_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4695
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4695_6 | HRGMv2_4695_6_19 | 14469 | 17645 | + | CBM67 | GH78 |
| pfam | HRGMv2_4695_6 | HRGMv2_4695_6_20 | 17800 | 18783 | + | Formyl_trans_N | Formyl_trans_C |
| TC | HRGMv2_4695_6 | HRGMv2_4695_6_21 | 18817 | 19503 | + | 3.A.1.122.2 |
| TC | HRGMv2_4695_6 | HRGMv2_4695_6_22 | 19500 | 20729 | + | 3.A.1.122.2 |
| NULL(UNKNOWN) | HRGMv2_4695_6 | HRGMv2_4695_6_23 | 20815 | 22320 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4695_6 | HRGMv2_4695_6_24 | 22433 | 23929 | + | 2.A.22.5.3 |
Gene ID: HRGMv2_4695_6_19
Type: CAZyme
Location: 14469 - 17645 (+)
Type: CAZyme
Location: 14469 - 17645 (+)
Gene ID: HRGMv2_4695_6_20
Type: pfam
Location: 17800 - 18783 (+)
Type: pfam
Location: 17800 - 18783 (+)
Gene ID: HRGMv2_4695_6_21
Type: TC
Location: 18817 - 19503 (+)
Type: TC
Location: 18817 - 19503 (+)
Gene ID: HRGMv2_4695_6_22
Type: TC
Location: 19500 - 20729 (+)
Type: TC
Location: 19500 - 20729 (+)
Gene ID: HRGMv2_4695_6_23
Type:
Location: 20815 - 22320 (+)
Type:
Location: 20815 - 22320 (+)
Gene ID: HRGMv2_4695_6_24
Type: TC
Location: 22433 - 23929 (+)
Type: TC
Location: 22433 - 23929 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Kiritimatiellia
Order
RFP12
Family
UBA1067
Genus
UBA1067
Species
UBA1067 sp934654805
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.