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Cluster: HRGMv2_4694_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4694_1 HRGMv2_4694_1_41 58002 61361 - GH2
TF HRGMv2_4694_1 HRGMv2_4694_1_42 61539 62714 + HTH_AraC
NULL(UNKNOWN) HRGMv2_4694_1 HRGMv2_4694_1_43 62780 64708 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4694_1 HRGMv2_4694_1_44 64721 66139 - GH109
CAZyme HRGMv2_4694_1 HRGMv2_4694_1_45 66172 69111 - GH163
pfam HRGMv2_4694_1 HRGMv2_4694_1_46 69467 72601 - DEAD | Helicase_C | CarD_TRCF_RID | TRCF | ResIII | UvrB_inter
pfam HRGMv2_4694_1 HRGMv2_4694_1_47 72624 73781 - 3Beta_HSD | Epimerase | Polysacc_synt_2 | NAD_binding_4 | GDP_Man_Dehyd
TC HRGMv2_4694_1 HRGMv2_4694_1_48 73785 76118 - 8.A.3.3.4
Gene ID: HRGMv2_4694_1_41
Type: CAZyme
Location: 58002 - 61361 (-)
Gene ID: HRGMv2_4694_1_42
Type: TF
Location: 61539 - 62714 (+)
Gene ID: HRGMv2_4694_1_43
Type:
Location: 62780 - 64708 (-)
Gene ID: HRGMv2_4694_1_44
Type: CAZyme
Location: 64721 - 66139 (-)
Gene ID: HRGMv2_4694_1_45
Type: CAZyme
Location: 66172 - 69111 (-)
Gene ID: HRGMv2_4694_1_46
Type: pfam
Location: 69467 - 72601 (-)
Gene ID: HRGMv2_4694_1_47
Type: pfam
Location: 72624 - 73781 (-)
Gene ID: HRGMv2_4694_1_48
Type: TC
Location: 73785 - 76118 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Verrucomicrobiota
→
Class
Kiritimatiellia
→
Order
RFP12
→
Family
UBA1067
→
Genus
UBA1731
→
Species
UBA1731 sp934667425

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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