Cluster: HRGMv2_4691_CGC25
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4691
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4691_31 | HRGMv2_4691_31_10 | 11968 | 12612 | - | 9.B.31.1.2 |
| CAZyme | HRGMv2_4691_31 | HRGMv2_4691_31_11 | 12631 | 14460 | - | GT2 | GT2 |
| pfam | HRGMv2_4691_31 | HRGMv2_4691_31_12 | 14500 | 15504 | - | OTCace | OTCace_N |
| pfam | HRGMv2_4691_31 | HRGMv2_4691_31_13 | 15526 | 15945 | - | ExbD |
| TC | HRGMv2_4691_31 | HRGMv2_4691_31_14 | 15935 | 16417 | - | 1.A.30.3.3 |
| peptidase | HRGMv2_4691_31 | HRGMv2_4691_31_15 | 16459 | 17925 | - | C44.UPW |
| TC | HRGMv2_4691_31 | HRGMv2_4691_31_16 | 18073 | 18639 | - | 2.A.51.1.6 |
| pfam | HRGMv2_4691_31 | HRGMv2_4691_31_17 | 18636 | 19118 | - | Chromate_transp |
| TC | HRGMv2_4691_31 | HRGMv2_4691_31_18 | 19200 | 20690 | - | 3.B.1.1.6 |
| TC | HRGMv2_4691_31 | HRGMv2_4691_31_19 | 20724 | 22517 | - | 3.B.1.1.1 |
| pfam | HRGMv2_4691_31 | HRGMv2_4691_31_20 | 22561 | 22782 | - | OAD_gamma |
| pfam | HRGMv2_4691_31 | HRGMv2_4691_31_21 | 22831 | 23277 | - | PRA-CH |
| CAZyme | HRGMv2_4691_31 | HRGMv2_4691_31_22 | 23419 | 25491 | - | GH78 |
| NULL(UNKNOWN) | HRGMv2_4691_31 | HRGMv2_4691_31_23 | 25509 | 26012 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4691_31 | HRGMv2_4691_31_24 | 26109 | 28298 | - | 3.A.11.3.1 |
Gene ID: HRGMv2_4691_31_10
Type: TC
Location: 11968 - 12612 (-)
Type: TC
Location: 11968 - 12612 (-)
Gene ID: HRGMv2_4691_31_11
Type: CAZyme
Location: 12631 - 14460 (-)
Type: CAZyme
Location: 12631 - 14460 (-)
Gene ID: HRGMv2_4691_31_12
Type: pfam
Location: 14500 - 15504 (-)
Type: pfam
Location: 14500 - 15504 (-)
Gene ID: HRGMv2_4691_31_13
Type: pfam
Location: 15526 - 15945 (-)
Type: pfam
Location: 15526 - 15945 (-)
Gene ID: HRGMv2_4691_31_14
Type: TC
Location: 15935 - 16417 (-)
Type: TC
Location: 15935 - 16417 (-)
Gene ID: HRGMv2_4691_31_15
Type: peptidase
Location: 16459 - 17925 (-)
Type: peptidase
Location: 16459 - 17925 (-)
Gene ID: HRGMv2_4691_31_16
Type: TC
Location: 18073 - 18639 (-)
Type: TC
Location: 18073 - 18639 (-)
Gene ID: HRGMv2_4691_31_17
Type: pfam
Location: 18636 - 19118 (-)
Type: pfam
Location: 18636 - 19118 (-)
Gene ID: HRGMv2_4691_31_18
Type: TC
Location: 19200 - 20690 (-)
Type: TC
Location: 19200 - 20690 (-)
Gene ID: HRGMv2_4691_31_19
Type: TC
Location: 20724 - 22517 (-)
Type: TC
Location: 20724 - 22517 (-)
Gene ID: HRGMv2_4691_31_20
Type: pfam
Location: 22561 - 22782 (-)
Type: pfam
Location: 22561 - 22782 (-)
Gene ID: HRGMv2_4691_31_21
Type: pfam
Location: 22831 - 23277 (-)
Type: pfam
Location: 22831 - 23277 (-)
Gene ID: HRGMv2_4691_31_22
Type: CAZyme
Location: 23419 - 25491 (-)
Type: CAZyme
Location: 23419 - 25491 (-)
Gene ID: HRGMv2_4691_31_23
Type:
Location: 25509 - 26012 (-)
Type:
Location: 25509 - 26012 (-)
Gene ID: HRGMv2_4691_31_24
Type: TC
Location: 26109 - 28298 (-)
Type: TC
Location: 26109 - 28298 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Kiritimatiellia
Order
RFP12
Family
UBA1067
Genus
UBA1067
Species
UBA1067 sp934621385
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.