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Cluster: HRGMv2_4688_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4688_13 HRGMv2_4688_13_2 179 1525 + 3.A.1.5.25
TC HRGMv2_4688_13 HRGMv2_4688_13_3 1515 2519 + 3.A.1.5.19
pfam HRGMv2_4688_13 HRGMv2_4688_13_4 2522 4657 + LRR_5 | LRR_5 | LRR_5 | LRR_5 | LRR_5 | LRR_5
NULL(UNKNOWN) HRGMv2_4688_13 HRGMv2_4688_13_5 4663 5571 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4688_13 HRGMv2_4688_13_6 5601 7085 - 2.A.66.2.16
pfam HRGMv2_4688_13 HRGMv2_4688_13_7 7176 8366 + Glycos_transf_1 | Glyco_transf_4 | Glyco_trans_4_4 | Glyco_trans_1_4
pfam HRGMv2_4688_13 HRGMv2_4688_13_8 8346 9512 - Glycos_transf_1 | Glyco_trans_1_4
CAZyme HRGMv2_4688_13 HRGMv2_4688_13_9 9509 10594 - GT4
Gene ID: HRGMv2_4688_13_2
Type: TC
Location: 179 - 1525 (+)
Gene ID: HRGMv2_4688_13_3
Type: TC
Location: 1515 - 2519 (+)
Gene ID: HRGMv2_4688_13_4
Type: pfam
Location: 2522 - 4657 (+)
Gene ID: HRGMv2_4688_13_5
Type:
Location: 4663 - 5571 (+)
Gene ID: HRGMv2_4688_13_6
Type: TC
Location: 5601 - 7085 (-)
Gene ID: HRGMv2_4688_13_7
Type: pfam
Location: 7176 - 8366 (+)
Gene ID: HRGMv2_4688_13_8
Type: pfam
Location: 8346 - 9512 (-)
Gene ID: HRGMv2_4688_13_9
Type: CAZyme
Location: 9509 - 10594 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_I
→
Class
Bacilli_A
→
Order
RFN20
→
Family
CAG-826
→
Genus
CAJOOD01
→
Species
CAJOOD01 sp019421105

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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